HHsearch alignment for GI: 254780484 and conserved domain: cd04172

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.26  E-value=2.2e-11  Score=84.58  Aligned_cols=158  Identities=13%  Similarity=0.105  Sum_probs=81.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r   30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG  109 (212)
Q Consensus        30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~  109 (212)
T Consensus         6 ~KivlvGd~~VGKTsLi~r~~~~~F-~-~~y~pTi--~~~---~~~~~~i~~~~v~l~iwDTaGqe~f~~l~~~~y----   74 (182)
T cd04172           6 CKIVVVGDSQCGKTALLHVFAKDCF-P-ENYVPTV--FEN---YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSY----   74 (182)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCC-C-CCCCCEE--EEE---EEEEEEECCEEEEEEEEECCCCHHCCCCCHHHH----
T ss_conf             8999999999899999999983999-9-9868735--322---689999999999999996898620122125551----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHH----------HHHHHH
Q ss_conf             998777766420000011223578--875454554321--025753221222211110246899----------999999
Q gi|254780484|r  110 LIVRYLSERSTLRCVYLLIDCRHG--VKQIDQDVFSFL--DKKAVSYQIVLTKIDKLSPTTAQE----------TLEKTK  175 (212)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~~~~----------~~~~~~  175 (212)
T Consensus        75 ---------~~~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~  145 (182)
T cd04172          75 ---------PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGA  145 (182)
T ss_pred             ---------CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf             ---------27878999964897788999999999999986879988999617101244145667764567786999999


Q ss_pred             HHHHHCCCCCCCEEEEECCCCC-CHHHHHHHHHHH
Q ss_conf             9975313689868999888889-989999999987
Q gi|254780484|r  176 YLIRNYPTAHPEVIPTSSVKRK-GIEVLRKAILET  209 (212)
Q Consensus       176 ~~~~~~~~~~~~i~~vSA~~g~-Gi~eL~~~I~~~  209 (212)
T Consensus       146 ~~A~~--~g~~~y~EtSAk~~~n~V~e~F~~a~~a  178 (182)
T cd04172         146 NMAKQ--IGAATYIECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             HHHHH--CCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             99997--6997999917078995989999999999