HHsearch alignment for GI: 254780484 and conserved domain: cd04172
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.26 E-value=2.2e-11 Score=84.58 Aligned_cols=158 Identities=13% Similarity=0.105 Sum_probs=81.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 6 ~KivlvGd~~VGKTsLi~r~~~~~F-~-~~y~pTi--~~~---~~~~~~i~~~~v~l~iwDTaGqe~f~~l~~~~y---- 74 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-P-ENYVPTV--FEN---YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSY---- 74 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC-C-CCCCCEE--EEE---EEEEEEECCEEEEEEEEECCCCHHCCCCCHHHH----
T ss_conf 8999999999899999999983999-9-9868735--322---689999999999999996898620122125551----
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHH----------HHHHHH
Q ss_conf 998777766420000011223578--875454554321--025753221222211110246899----------999999
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHG--VKQIDQDVFSFL--DKKAVSYQIVLTKIDKLSPTTAQE----------TLEKTK 175 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~~~~----------~~~~~~ 175 (212)
T Consensus 75 ---------~~~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~ 145 (182)
T cd04172 75 ---------PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGA 145 (182)
T ss_pred ---------CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf ---------27878999964897788999999999999986879988999617101244145667764567786999999
Q ss_pred HHHHHCCCCCCCEEEEECCCCC-CHHHHHHHHHHH
Q ss_conf 9975313689868999888889-989999999987
Q gi|254780484|r 176 YLIRNYPTAHPEVIPTSSVKRK-GIEVLRKAILET 209 (212)
Q Consensus 176 ~~~~~~~~~~~~i~~vSA~~g~-Gi~eL~~~I~~~ 209 (212)
T Consensus 146 ~~A~~--~g~~~y~EtSAk~~~n~V~e~F~~a~~a 178 (182)
T cd04172 146 NMAKQ--IGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHH--CCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 99997--6997999917078995989999999999