HHsearch alignment for GI: 254780484 and conserved domain: cd04174

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.35  E-value=1.4e-11  Score=85.65  Aligned_cols=167  Identities=11%  Similarity=0.137  Sum_probs=86.8

Q ss_pred             HHCCCCCCC--EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHH
Q ss_conf             758876686--899974899889899999738973798738884145212026655567850896499997600101112
Q gi|254780484|r   22 GLLPKAGPP--EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARA   99 (212)
Q Consensus        22 ~~~P~~~~p--~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~   99 (212)
T Consensus         4 ~~~~~p~~~~~KiVlVGD~~VGKTsLl~~~~~~~F-~-~~y~pTv--~~~---~~~~i~v~~~~v~L~lWDTAGqE~y~~   76 (232)
T cd04174           4 RRIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCY-P-ETYVPTV--FEN---YTAGLETEEQRVELSLWDTSGSPYYDN   76 (232)
T ss_pred             CCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCC-C-CCCCCCE--EEE---EEEEEEECCEEEEEEEEECCCCCCCCH
T ss_conf             67999985588999999899899999999973989-9-9858836--888---899999999999999983899701003


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--C-CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH----
Q ss_conf             244789888899877776642000001122357--8-875454554321025753221222211110246899999----
Q gi|254780484|r  100 PKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRH--G-VKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLE----  172 (212)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~----  172 (212)
T Consensus        77 lr~----------~yY~~a~~~ll~Fdvt~~~Sfe~~~~~Wi~Ei~~~--~p~~piiLVGnK~DLr~d~~~l~~L~~~~~  144 (232)
T cd04174          77 VRP----------LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQ  144 (232)
T ss_pred             HHH----------HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEECHHCCCCHHHHHHHHHCCC
T ss_conf             679----------97406878999996898799998999999999986--899978999876021547577889975688


Q ss_pred             ------HHHHHHHHCCCCCCCEEEEECCCCC-CHHHHHHHHHHH
Q ss_conf             ------9999975313689868999888889-989999999987
Q gi|254780484|r  173 ------KTKYLIRNYPTAHPEVIPTSSVKRK-GIEVLRKAILET  209 (212)
Q Consensus       173 ------~~~~~~~~~~~~~~~i~~vSA~~g~-Gi~eL~~~I~~~  209 (212)
T Consensus       145 ~pVt~eeg~~~Ak--~iga~~Y~E~SA~tge~~v~~vF~~a~~~  186 (232)
T cd04174         145 APISYEQGCALAK--QLGAEVYLECSAFTSEKSIHSIFRSASLL  186 (232)
T ss_pred             CCCCHHHHHHHHH--HCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             8757999999999--74997899875686662599999999999