HHsearch alignment for GI: 254780484 and conserved domain: cd04174
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.35 E-value=1.4e-11 Score=85.65 Aligned_cols=167 Identities=11% Similarity=0.137 Sum_probs=86.8
Q ss_pred HHCCCCCCC--EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHH
Q ss_conf 758876686--899974899889899999738973798738884145212026655567850896499997600101112
Q gi|254780484|r 22 GLLPKAGPP--EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARA 99 (212)
Q Consensus 22 ~~~P~~~~p--~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 99 (212)
T Consensus 4 ~~~~~p~~~~~KiVlVGD~~VGKTsLl~~~~~~~F-~-~~y~pTv--~~~---~~~~i~v~~~~v~L~lWDTAGqE~y~~ 76 (232)
T cd04174 4 RRIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCY-P-ETYVPTV--FEN---YTAGLETEEQRVELSLWDTSGSPYYDN 76 (232)
T ss_pred CCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCC-C-CCCCCCE--EEE---EEEEEEECCEEEEEEEEECCCCCCCCH
T ss_conf 67999985588999999899899999999973989-9-9858836--888---899999999999999983899701003
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--C-CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH----
Q ss_conf 244789888899877776642000001122357--8-875454554321025753221222211110246899999----
Q gi|254780484|r 100 PKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRH--G-VKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLE---- 172 (212)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~---- 172 (212)
T Consensus 77 lr~----------~yY~~a~~~ll~Fdvt~~~Sfe~~~~~Wi~Ei~~~--~p~~piiLVGnK~DLr~d~~~l~~L~~~~~ 144 (232)
T cd04174 77 VRP----------LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQ 144 (232)
T ss_pred HHH----------HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEECHHCCCCHHHHHHHHHCCC
T ss_conf 679----------97406878999996898799998999999999986--899978999876021547577889975688
Q ss_pred ------HHHHHHHHCCCCCCCEEEEECCCCC-CHHHHHHHHHHH
Q ss_conf ------9999975313689868999888889-989999999987
Q gi|254780484|r 173 ------KTKYLIRNYPTAHPEVIPTSSVKRK-GIEVLRKAILET 209 (212)
Q Consensus 173 ------~~~~~~~~~~~~~~~i~~vSA~~g~-Gi~eL~~~I~~~ 209 (212)
T Consensus 145 ~pVt~eeg~~~Ak--~iga~~Y~E~SA~tge~~v~~vF~~a~~~ 186 (232)
T cd04174 145 APISYEQGCALAK--QLGAEVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred CCCCHHHHHHHHH--HCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 8757999999999--74997899875686662599999999999