HHsearch alignment for GI: 254780484 and conserved domain: pfam05049
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=99.39 E-value=1.2e-11 Score=86.15 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=105.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCE---EEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 868999748998898999997389737987388841---45212026655567850896499997600101112244789
Q gi|254780484|r 29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGR---TQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVD 105 (212)
Q Consensus 29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~t---t~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~ 105 (212)
T Consensus 35 ~lnIavtGesG~GkSsfINalRg~g~e~~~aA~tGvvetT~~~~~Y-----~--hp~~pnV~lwDLPG~gt~~f~~~~Yl 107 (375)
T pfam05049 35 PLKIAVTGDSGNGKSSFINALRGIGHEEDGSAPTGVVETTMKRTPY-----S--HPHFPNVVLWDLPGLGATNFTVETYL 107 (375)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC-----C--CCCCCCEEEECCCCCCCCCCCHHHHH
T ss_conf 2479985489986789999874789877776876876632675567-----8--99999807962899998998989999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC---------HHHHHHHHHHHHH
Q ss_conf 8888998777766420000011223578875454554321025753221222211110---------2468999999999
Q gi|254780484|r 106 SWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLS---------PTTAQETLEKTKY 176 (212)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~---------~~~~~~~~~~~~~ 176 (212)
T Consensus 108 ~----------~~~f~~yDfFiiiss~rf~~n~v~LAk~i~~mgK~fyfVrtKvD~Dl~~e~~~kp~~F~~e~~Lq~IR~ 177 (375)
T pfam05049 108 E----------EMKFSEYDFFIIISSERFSLNDVKLAKAIQRMGKRFYFVRTKLDSDLSNEQKGKPQTFPKEKVLQNIQD 177 (375)
T ss_pred H----------HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 8----------748564778999967754320189999999838947999862367606576258999998999999999
Q ss_pred H----HHHCCCCCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf 9----753136898689998888--899899999999872
Q gi|254780484|r 177 L----IRNYPTAHPEVIPTSSVK--RKGIEVLRKAILETI 210 (212)
Q Consensus 177 ~----~~~~~~~~~~i~~vSA~~--g~Gi~eL~~~I~~~l 210 (212)
T Consensus 178 ~c~~~L~k~gv~eP~VFLvSnfdl~~yDFp~L~~TL~~eL 217 (375)
T pfam05049 178 NCRNNLQKEGVKEPPIFLVSNLDPSHYDFPKLRDTLLKDL 217 (375)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCHHHCCHHHHHHHHHHHH
T ss_conf 9999998758889978998178813268189999999873