HHsearch alignment for GI: 254780484 and conserved domain: pfam05879
>pfam05879 RHD3 Root hair defective 3 GTP-binding protein (RHD3). This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement. The family also contains the homologous yeast synthetic enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking.
Probab=97.26 E-value=0.00043 Score=42.65 Aligned_cols=95 Identities=19% Similarity=0.144 Sum_probs=45.1
Q ss_pred ECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74899889899999738973798738884145212026655567850896499997600101112244789888899877
Q gi|254780484|r 35 SGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGLIVRY 114 (212)
Q Consensus 35 vG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 114 (212)
T Consensus 1 ~G~QSsGKSTLLN~LFgT~F--~~md~~~r~QTTkGIW~a~~~~~~~~~~~~lvmDvEGtDgrER-GEDq~FErksALFA 77 (741)
T pfam05879 1 FGSQSTGKSTLLNHLFGTNF--SVMDASGRQQTTKGIWLAKCKGIGNMEPNILVMDVEGTDGRER-GEDQDFERKSALFA 77 (741)
T ss_pred CCCCCCCHHHHHHHHHCCCC--CHHCCCCCCCCCCHHHEEECCCCCCCCCCEEEEECCCCCCCCC-CCCCCHHHHHHHHH
T ss_conf 99988758889888858996--3011246776440021000478777789869997787873101-56522799999999
Q ss_pred HHHHHHHCCCCCCCCCCC
Q ss_conf 776642000001122357
Q gi|254780484|r 115 LSERSTLRCVYLLIDCRH 132 (212)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ 132 (212)
T Consensus 78 LA~SdvLIVNmW~hdIG~ 95 (741)
T pfam05879 78 LATSEVLIVNMWEHQVGL 95 (741)
T ss_pred HHHCCEEEEECCHHHHCC
T ss_conf 996024567515365143