HHsearch alignment for GI: 254780484 and conserved domain: pfam08477
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.64 E-value=4.8e-08 Score=65.41 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=55.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL 110 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 110 (212)
T Consensus 1 KivvvG~~~vGKTSLi~r~~~~~f~~~-~~~~--~~~~--~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--------- 66 (118)
T pfam08477 1 KVVVIGDKGSGKSSLLSQLVGGEFPPE-IPEE--IQGD--TLAVDTLEVDGDTELLHIWDFGGREELKFEH--------- 66 (118)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCC-CCCC--CCCC--EEEEEEEEECCCEEEEEEEECCCCHHHHHHH---------
T ss_conf 999999899789999999983988876-6678--7777--6888999999928999999899967776666---------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHH-----HHHHHHH-CCCCCCCCCCCCCCC
Q ss_conf 9877776642000001122357887545-----4554321-025753221222211
Q gi|254780484|r 111 IVRYLSERSTLRCVYLLIDCRHGVKQID-----QDVFSFL-DKKAVSYQIVLTKID 160 (212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~v~nK~D 160 (212)
T Consensus 67 -~~~~---~~~d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 67 -IIFM---KTADAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred -HHHC---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf -5422---587467899979987899999999999999982099998899996859