HHsearch alignment for GI: 254780484 and conserved domain: pfam09439
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=98.90 E-value=3e-08 Score=66.58 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=67.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 68689997489988989999973897379873888414521202665556785089649999760010111224478988
Q gi|254780484|r 28 GPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSW 107 (212)
Q Consensus 28 ~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ 107 (212)
T Consensus 2 ~~ptvLllGl~~sGKT~Lf~~L~~~~~~~T-----~tS~~~n~----~~~~~~~~~~~~~lvD~PGh~klR~-------- 64 (181)
T pfam09439 2 SQPAVIIAGLCDSGKTSLFTLLTTGSVRKT-----VTSQEPSA----AYKYMNNKGNSLTLIDFPGHVKLRY-------- 64 (181)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCE-----ECCCCCCC----EEEEECCCCCEEEEEECCCCHHHHH--------
T ss_conf 988699986899989999999975994875-----88867864----0687516896689998899689999--------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC---CHHHHHHHHHH-----CCCCCCCCCCCCCCCCCC---HHHHHHHHH
Q ss_conf 889987777664200000112235788---75454554321-----025753221222211110---246899999
Q gi|254780484|r 108 GGLIVRYLSERSTLRCVYLLIDCRHGV---KQIDQDVFSFL-----DKKAVSYQIVLTKIDKLS---PTTAQETLE 172 (212)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~v~nK~D~~~---~~~~~~~~~ 172 (212)
T Consensus 65 ~~~~--~~~~~~~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqDl~~A~~~~~Ik~~LE 138 (181)
T pfam09439 65 KLLE--TLKDSSSLRGLVFVVDSTAFPKEVTDTAEFLYDILSITELLKNGIDILIACNKQEIFTARPPKKIKQALE 138 (181)
T ss_pred HHHH--HHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 9998--6430026449999997866566799999999999844543368997899973746335779999999999