HHsearch alignment for GI: 254780484 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.55 E-value=2.7e-14 Score=101.27 Aligned_cols=160 Identities=13% Similarity=0.163 Sum_probs=93.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 76686899974899889899999738973798738884145212026655567850896499997600101112244789
Q gi|254780484|r 26 KAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVD 105 (212)
Q Consensus 26 ~~~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~ 105 (212)
T Consensus 10 ~kk~~kililG~~~~GKTsil~~l~~~~~~---~~~pTvg----~----~~~~~~~~~~~l~iwD~~Gqe~~r~l~~~-- 76 (175)
T smart00177 10 GNKEMRILMVGLDAAGKTTILYKLKLGESV---TTIPTIG----F----NVETVTYKNISFTVWDVGGQDKIRPLWRH-- 76 (175)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHCCCCC---CCCCCCC----C----EEEEEEECCEEEEEEECCCCCCCCHHHHH--
T ss_conf 788899999988999989999999659977---7579788----1----07999989899999989998545536777--
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--HHHHHHHH---HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 888899877776642000001122357887--54545543---2102575322122221111024689999999999753
Q gi|254780484|r 106 SWGGLIVRYLSERSTLRCVYLLIDCRHGVK--QIDQDVFS---FLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRN 180 (212)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~ 180 (212)
T Consensus 77 --------Y---y~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l--~~ 143 (175)
T smart00177 77 --------Y---YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGL--HS 143 (175)
T ss_pred --------H---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCH--HH
T ss_conf --------5---5776189999866877899999999999963153169869999845667678899999999686--65
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 1368986899988888998999999998728
Q gi|254780484|r 181 YPTAHPEVIPTSSVKRKGIEVLRKAILETIN 211 (212)
Q Consensus 181 ~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l~ 211 (212)
T Consensus 144 ~~~~~~~i~~~SA~tG~GI~e~f~wL~~~ik 174 (175)
T smart00177 144 IRDRNWYIQPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred HCCCCEEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 4079759998268789698999999999844