RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780484|ref|YP_003064897.1| GTPase EngB [Candidatus
Liberibacter asiaticus str. psy62]
(212 letters)
>gnl|CDD|179035 PRK00454, engB, GTP-binding protein YsxC; Reviewed.
Length = 196
Score = 255 bits (653), Expect = 8e-69
Identities = 89/200 (44%), Positives = 118/200 (59%), Gaps = 12/200 (6%)
Query: 12 WIFLRGVPEIGLLPKAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFF 71
F+ P++ LP PEIAF+GRSNVGKSSLIN L NRKNLARTS PGRTQ +NFF
Sbjct: 7 AEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFF 66
Query: 72 VPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCR 131
D + LVD+PGYGYA+ K+ + W LI YL R L+ V LLID R
Sbjct: 67 EVNDK---------LRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSR 117
Query: 132 HGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPT 191
H +K++D + +L + + IVLTK DKL ++ L+K + + EVI
Sbjct: 118 HPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVR---KALKFGDDEVILF 174
Query: 192 SSVKRKGIEVLRKAILETIN 211
SS+K++GI+ LR AI + +
Sbjct: 175 SSLKKQGIDELRAAIAKWLA 194
>gnl|CDD|163346 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein
YsxC/EngB. Members of this protein family are a GTPase
associated with ribosome biogenesis, typified by YsxC
from Bacillus subutilis. The family is widely but not
universally distributed among bacteria. Members commonly
are called EngB based on homology to EngA, one of
several other GTPases of ribosome biogenesis. Cutoffs as
set find essentially all bacterial members, but also
identify large numbers of eukaryotic (probably
organellar) sequences. This protein is found in about 80
percent of bacterial genomes.
Length = 179
Score = 233 bits (598), Expect = 2e-62
Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 12/188 (6%)
Query: 14 FLRGVPEIGLLPKAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFF-V 72
F++ ++ LP PEIAF+GRSNVGKSSLIN L NRK LARTS PGRTQ +NFF V
Sbjct: 3 FVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV 62
Query: 73 PKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRH 132
F LVD+PGYGYA+ K+ + W LI YL +R L+ V LL+D RH
Sbjct: 63 NDGFR----------LVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH 112
Query: 133 GVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTS 192
+K++D ++ +L ++ + IVLTK DKL + + L+K K ++ P V S
Sbjct: 113 PLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA-DDPSVQLFS 171
Query: 193 SVKRKGIE 200
S+K+ GI+
Sbjct: 172 SLKKTGID 179
>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional.
Length = 201
Score = 64.9 bits (159), Expect = 1e-11
Identities = 58/198 (29%), Positives = 93/198 (46%), Gaps = 31/198 (15%)
Query: 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALV 89
PEI F GRSNVGKS+L+ L +K R PG T+ N + D+ + L
Sbjct: 10 PEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHY---DWGDFI-------LT 57
Query: 90 DMPGYGYARAPKKNV-DSWGGLIVRYLSE--RSTLRCVYLLIDC--------RHGVKQ-- 136
D+PG+G+ K V + IVRY+ + L V L++D R +
Sbjct: 58 DLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAV-LVVDGKSFIEIIERWEGRGEI 116
Query: 137 -IDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAH--PEVIPTSS 193
ID ++F FL + + + + K+DK+ E L++ + YP ++I S
Sbjct: 117 PIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLGLYPPWRQWQDIIAPIS 174
Query: 194 VKRKGIEVLRKAILETIN 211
K+ GIE L++AI + ++
Sbjct: 175 AKKGGIEELKEAIRKRLH 192
>gnl|CDD|178854 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 62.0 bits (152), Expect = 1e-10
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 28/183 (15%)
Query: 32 IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQH-LNFFVPKDFSNLKNNLPAMALVD 90
+A GR NVGKS+L+N LV +K ++ S P T+H + V +D + + VD
Sbjct: 8 VAIVGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRHRIRGIVTEDDAQI-------IFVD 59
Query: 91 MPGYGYARAPKKNVDSWGGLIVRYLSE--RSTLR---CVYLLIDCRHGVKQIDQDVFSFL 145
PG PK+ ++ R +++ S+L+ V ++D + D+ + L
Sbjct: 60 TPGI---HKPKRALN-------RAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKL 109
Query: 146 DKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKA 205
K +VL KID + +E L + L A E++P S++K ++ L
Sbjct: 110 KKVKTPVILVLNKIDLVKD--KEELLPLLEELSELMDFA--EIVPISALKGDNVDELLDV 165
Query: 206 ILE 208
I +
Sbjct: 166 IAK 168
>gnl|CDD|163343 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability.
Length = 429
Score = 47.1 bits (113), Expect = 4e-06
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 30/201 (14%)
Query: 19 PEIGLLPKAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDF-- 76
E + GP +IA GR NVGKS+L+N L+ + S+ G T +D
Sbjct: 162 EEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLG-EERVIVSDIAGTT--------RDSID 212
Query: 77 SNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGLIVRYLSERSTLRC------VYLLIDC 130
+ N L+D G R K + V S TL+ V L++D
Sbjct: 213 IPFERNGKKYLLIDTAG---IRRKGKVTEG-----VEKYSVLRTLKAIERADVVLLVLDA 264
Query: 131 RHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRN--YPTAHPEV 188
G+ + D + + + + IV+ K D + ++T E+ K +R +
Sbjct: 265 TEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD---EKTREEFKKELRRKLPFLDFAPI 321
Query: 189 IPTSSVKRKGIEVLRKAILET 209
+ S++ +G++ L AI E
Sbjct: 322 VFISALTGQGVDKLLDAIDEV 342
Score = 39.0 bits (92), Expect = 0.001
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 32 IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRT 65
+A GR NVGKS+L N L K A S+ PG T
Sbjct: 2 VAIVGRPNVGKSTLFNRLT-GKRDAIVSDTPGVT 34
>gnl|CDD|161885 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE. TrmE,
also called MnmE and previously designated ThdF
(thiophene and furan oxidation protein), is a GTPase
involved in tRNA modification to create
5-methylaminomethyl-2-thiouridine in the wobble position
of some tRNAs. This protein and GidA form an
alpha2/beta2 heterotetramer.
Length = 442
Score = 43.2 bits (102), Expect = 4e-05
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 25/183 (13%)
Query: 29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMAL 88
++A G NVGKSSL+N L+ +++ A S+ G T+ V DF L L + L
Sbjct: 203 GFKLAIVGSPNVGKSSLLNALL-KQDRAIVSDIKGTTRD---VVEGDF-ELNGIL--IKL 255
Query: 89 VDMPGYGYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKK 148
+D G R V+ G I + V ++D + + D + L+K
Sbjct: 256 LDTAGI---REHADFVERLG--IEKSFKAIKQADLVIYVLDASQPLTK-DDFLIIDLNKS 309
Query: 149 AVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILE 208
+ +VL KID L + N S K+ I+ L + +
Sbjct: 310 KKPFILVLNKID-LKI---NSLEFFVSSKVLNSSNL--------SAKQLKIKALVDLLTQ 357
Query: 209 TIN 211
IN
Sbjct: 358 KIN 360
>gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 42.9 bits (101), Expect = 6e-05
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 19 PEIGLLPKAGPPEIAFSGRSNVGKSSLINILVNRK-----NLARTSNAP 62
G L +G +A GR NVGKSSL+N L + + +LA T+ P
Sbjct: 440 KTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDP 488
Score = 34.4 bits (79), Expect = 0.023
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 22/134 (16%)
Query: 32 IAFSGRSNVGKSSLINILVNRKNLARTSNAPG----RTQHLNFFVPKDFSNLKNNLPAMA 87
+A GR NVGKS+L+N ++ R+ A + PG R + + DF
Sbjct: 278 VAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFK---------- 326
Query: 88 LVDMPGYGYARAPKKNVDSWGGLIVRYLS-ERSTLRCVYLLIDCRHGVKQIDQDVFSFLD 146
LVD G+ A + +DS I S V ++D + G+ D+ + L
Sbjct: 327 LVDTGGW---EADVEGIDS---AIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLR 380
Query: 147 KKAVSYQIVLTKID 160
+ + + KID
Sbjct: 381 RAGKPVVLAVNKID 394
>gnl|CDD|163345 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein
YlqF. Members of this protein family are GTP-binding
proteins involved in ribosome biogenesis, including the
essential YlqF protein of Bacillus subtilis, which is an
essential protein. They are related to Era, EngA, and
other GTPases of ribosome biogenesis, but are circularly
permuted. This family is not universal, and is not
present in Escherichia coli, and so is not as well
studied as some other GTPases. This model is built for
bacterial members.
Length = 276
Score = 42.5 bits (101), Expect = 8e-05
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 39 NVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPG 93
NVGKS+LIN L +K A+ N PG T+ + L + L L+D PG
Sbjct: 128 NVGKSTLINRLAGKKV-AKVGNRPGVTKGQQWI------KLSDGL---ELLDTPG 172
>gnl|CDD|181957 PRK09563, rbgA, GTPase YlqF; Reviewed.
Length = 287
Score = 42.1 bits (100), Expect = 1e-04
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 10/55 (18%)
Query: 39 NVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPG 93
NVGKS+LIN L +K +A+T N PG T+ + L L L+D PG
Sbjct: 131 NVGKSTLINRLAGKK-IAKTGNRPGVTKAQQWI------KLGKGL---ELLDTPG 175
>gnl|CDD|178858 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 38.9 bits (92), Expect = 0.001
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 19 PEIGLLPKAGPPEIAFSGRSNVGKSSLINILVNRKNLAR--TSNAPGRT 65
E + P +IA GR NVGKSSLIN L+ + R S+ G T
Sbjct: 163 EEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEE---RVIVSDIAGTT 208
Score = 35.8 bits (84), Expect = 0.008
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRT 65
P +A GR NVGKS+L N L K A ++ PG T
Sbjct: 2 PVVAIVGRPNVGKSTLFNRLT-GKRDAIVADTPGVT 36
Score = 34.3 bits (80), Expect = 0.023
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 124 VYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRN--Y 181
V L+ID G+ + D + + + IV+ K D + ++T+E+ K +R
Sbjct: 259 VLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD----EKTMEEFKKELRRRLP 314
Query: 182 PTAHPEVIPTSSVKRKGIEVLRKAILE 208
+ ++ S++ +G++ L +AI E
Sbjct: 315 FLDYAPIVFISALTGQGVDKLLEAIDE 341
>gnl|CDD|183417 PRK12299, obgE, GTPase CgtA; Reviewed.
Length = 335
Score = 37.4 bits (88), Expect = 0.003
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 154 IVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILETIN 211
+VL KID L +E + P V S+V +G++ L +A+ E +
Sbjct: 276 LVLNKIDLLDEEEEREKRAALELAALGGP-----VFLISAVTGEGLDELLRALWELLE 328
>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed.
Length = 472
Score = 37.3 bits (87), Expect = 0.003
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 18 VPEIGLLPKAGPPEIAFSGRSNVGKSSLINIL 49
VP +G GP +A G+ NVGKSSL+N L
Sbjct: 201 VPRVGSAS-GGPRRVALVGKPNVGKSSLLNKL 231
Score = 33.8 bits (78), Expect = 0.030
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 27 AGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRT 65
P +A GR NVGKS+L+N ++ R+ A + PG T
Sbjct: 36 GPLPVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVT 73
>gnl|CDD|163162 TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family
is one of a number of homologous small, well-conserved
GTP-binding proteins with pleiotropic effects. Bacterial
members are designated HflX, following the naming
convention in Escherichia coli where HflX is encoded
immediately downstream of the RNA chaperone Hfq, and
immediately upstream of HflKC, a membrane-associated
protease pair with an important housekeeping function.
Over large numbers of other bacterial genomes, the
pairing with hfq is more significant than with hflK and
hlfC. The gene from Homo sapiens in this family has been
named PGPL (pseudoautosomal GTP-binding protein-like).
Length = 351
Score = 37.1 bits (87), Expect = 0.004
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 13/77 (16%)
Query: 136 QIDQ--DVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSS 193
QI+ V L + + +V KID L + E +PE + S+
Sbjct: 286 QIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIERLEEG-----------YPEAVFVSA 334
Query: 194 VKRKGIEVLRKAILETI 210
+G+++L +AI E +
Sbjct: 335 KTGEGLDLLLEAIAERL 351
Score = 26.3 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 26 KAGPPEIAFSGRSNVGKSSLINILVN 51
+A P +A G +N GKS+L N L
Sbjct: 186 RADVPTVALVGYTNAGKSTLFNALTG 211
>gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This model
recognizes a large number of small GTP-binding proteins
and related domains in larger proteins. Note that the
alpha chains of heterotrimeric G proteins are larger
proteins in which the NKXD motif is separated from the
GxxxxGK[ST] motif (P-loop) by a long insert and are not
easily detected by this model.
Length = 161
Score = 36.2 bits (84), Expect = 0.007
Identities = 38/182 (20%), Positives = 62/182 (34%), Gaps = 31/182 (17%)
Query: 32 IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDM 91
I G NVGKS+L+N L N T PG T++ L+D
Sbjct: 4 IVIVGDPNVGKSTLLNRL--LGNKFITEYKPGTTRNYV----TTVIEEDGKTYKFNLLDT 57
Query: 92 PGYGYARAPKKNVDSWGGLIVRYLSERSTLR--CVY----LLIDCRHGVKQIDQDVFSFL 145
G RA +R L R+ V+ L++D +++ +++
Sbjct: 58 AGQEDYRA------------IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA 105
Query: 146 DKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKA 205
+ +V KID +T + N +IP S+ K I+ K
Sbjct: 106 ESNVP-IILVGNKIDLRDAKL--KTHVAFLFAKLNGEP----IIPLSAETGKNIDSAFKI 158
Query: 206 IL 207
+
Sbjct: 159 VE 160
>gnl|CDD|161735 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
The Aquifex aeolicus ortholog is split into consecutive
open reading frames. Consequently, this model was build
in fragment mode (-f option).
Length = 245
Score = 35.8 bits (83), Expect = 0.009
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 34 FSGRSNVGKSSLINILVNRKNLA--RTSNAPGRTQH 67
F+G+S VGKSSLIN L S+ G +H
Sbjct: 125 FAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKH 160
>gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 35.4 bits (82), Expect = 0.011
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 19/69 (27%)
Query: 34 FSGRSNVGKSSLINILVNRKNLARTSNAPGR-------TQHLNFFVPKDFSNLKNNLPAM 86
+G S VGKSSLIN L+ L R G+ T+H+ F LP
Sbjct: 177 VAGPSGVGKSSLINRLIPDVEL-RVGKVSGKLGRGRHTTRHVELF----------ELPNG 225
Query: 87 ALV-DMPGY 94
L+ D PG+
Sbjct: 226 GLLADTPGF 234
>gnl|CDD|162989 TIGR02729, Obg_CgtA, Obg family GTPase CgtA. This model describes
a univeral, mostly one-gene-per-genome GTP-binding
protein that associates with ribosomal subunits and
appears to play a role in ribosomal RNA maturation. This
GTPase, related to the nucleolar protein Obg, is
designated CgtA in bacteria. Mutations in this gene are
pleiotropic, but it appears that effects on cellular
functions such as chromosome partition may be secondary
to the effect on ribosome structure. Recent work done in
Vibrio cholerae shows an essential role in the stringent
response, in which RelA-dependent ability to synthesize
the alarmone ppGpp is required for deletion of this
GTPase to be lethal.
Length = 329
Score = 35.1 bits (82), Expect = 0.013
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 154 IVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILETIN 211
+VL KID L E K L + V P S++ +G++ L A+ E +
Sbjct: 278 VVLNKIDLLDEEELAE---LLKELKKALGK---PVFPISALTGEGLDELLYALAELLE 329
>gnl|CDD|179996 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 34.7 bits (81), Expect = 0.019
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 32 IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRT 65
+ +GR NVGKSSL+N L+ A ++ G T
Sbjct: 218 VVIAGRPNVGKSSLLNALLGE-ERAIVTDIAGTT 250
Score = 34.7 bits (81), Expect = 0.019
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 17/87 (19%)
Query: 123 CVYLLIDCRHGVKQIDQDVFS-FLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNY 181
V L++D + + D ++ DK + +VL K D +E
Sbjct: 297 LVLLVLDASEPLTEEDDEILEELKDKPVI---VVLNKADLTGEIDLEEE----------- 342
Query: 182 PTAHPEVIPTSSVKRKGIEVLRKAILE 208
VI S+ +GI+ LR+AI E
Sbjct: 343 --NGKPVIRISAKTGEGIDELREAIKE 367
>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 34.0 bits (79), Expect = 0.028
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 34 FSGRSNVGKSSLINILVNRKNLART---SNAPGRTQH 67
+G+S VGKS+L+N L L +T S A GR +H
Sbjct: 169 LAGQSGVGKSTLLNALAPDLEL-KTGEISEALGRGKH 204
>gnl|CDD|163393 TIGR03680, eif2g_arch, translation initiation factor 2 subunit
gamma. eIF-2 functions in the early steps of protein
synthesis by forming a ternary complex with GTP and
initiator tRNA.
Length = 406
Score = 33.9 bits (78), Expect = 0.030
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 154 IVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILETI 210
IV KID +S A E E+ K ++ + +IP S++ I+ L +AI + I
Sbjct: 139 IVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195
>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era. Era is an essential
GTPase in Escherichia coli and many other bacteria. It
plays a role in ribosome biogenesis. Few bacteria lack
this protein.
Length = 270
Score = 33.9 bits (78), Expect = 0.035
Identities = 33/176 (18%), Positives = 60/176 (34%), Gaps = 20/176 (11%)
Query: 32 IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDM 91
+A GR NVGKS+L+N L +K TS T++ + + +D
Sbjct: 3 VAILGRPNVGKSTLLNQLHGQKISI-TSPKAQTTRN------RISGIHTTGASQIIFIDT 55
Query: 92 PGYGYARAPKKNVDSWGGLIVRYLSER-STLRCVYLLIDCRHGVKQIDQDVFSFLDKKAV 150
PG+ K S L+++ + + ++D + V + L
Sbjct: 56 PGF---HEKKH---SLNRLMMKEARSAIGGVDLILFVVDSDQWNG-DGEFVLTKLQNLKR 108
Query: 151 SYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAI 206
+ K+D + KY I +++P S++ L I
Sbjct: 109 PVVLTRNKLDNKFK--DKLLPLIDKYAIL---EDFKDIVPISALTGDNTSFLAAFI 159
>gnl|CDD|132636 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH. This
family describes YqeH, a member of a larger family of
GTPases involved in ribosome biogenesis. Like YqlF, it
shows a cyclical permutation relative to GTPases EngA
(in which the GTPase domain is duplicated), Era, and
others. Members of this protein family are found in a
relatively small number of bacterial species, including
Bacillus subtilis but not Escherichia coli.
Length = 360
Score = 33.7 bits (78), Expect = 0.039
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 34 FSGRSNVGKSSLINILVN----RKNLARTSNAPGRT 65
G +NVGKSSLIN L+ K++ TS PG T
Sbjct: 159 VVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT 194
>gnl|CDD|183415 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 33.2 bits (77), Expect = 0.053
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 145 LDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRK 204
L++ + +V K+D A+E LE+ K P+V P S++ +G++ L
Sbjct: 273 LERPQI---VVANKMDLPE---AEENLEEFK---EKLG---PKVFPISALTGQGLDELLY 320
Query: 205 AILETI 210
A+ E +
Sbjct: 321 AVAELL 326
Score = 25.8 bits (58), Expect = 8.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 39 NVGKSSLINILVNRK 53
NVGKS+L++++ N K
Sbjct: 168 NVGKSTLLSVVSNAK 182
>gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB.
In prokaryotes, the incorporation of selenocysteine as
the 21st amino acid, encoded by TGA, requires several
elements: SelC is the tRNA itself, SelD acts as a donor
of reduced selenium, SelA modifies a serine residue on
SelC into selenocysteine, and SelB is a
selenocysteine-specific translation elongation factor.
3-prime or 5-prime non-coding elements of mRNA have been
found as probable structures for directing
selenocysteine incorporation. This model describes the
elongation factor SelB, a close homolog rf EF-Tu. It may
function by replacing EF-Tu. A C-terminal domain not
found in EF-Tu is in all SelB sequences in the seed
alignment except that from Methanococcus jannaschii.
This model does not find an equivalent protein for
eukaryotes.
Length = 581
Score = 32.9 bits (75), Expect = 0.058
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 126 LLIDCRHGVKQIDQDVFSFLDKKAVSYQI-VLTKIDKLSPTTAQETLEKTKYLIRNYPTA 184
L++D GV + + LD + + I V+TK D+++ + T K ++ +Y
Sbjct: 79 LVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFL 138
Query: 185 HP-EVIPTSSVKRKGIEVLRKAIL 207
++ TS+ +GI L+K +
Sbjct: 139 KNAKIFKTSAKTGQGIGELKKELK 162
>gnl|CDD|184332 PRK13796, PRK13796, GTPase YqeH; Provisional.
Length = 365
Score = 32.1 bits (74), Expect = 0.11
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 36 GRSNVGKSSLINILVNR----KNLARTSNAPGRT 65
G +NVGKS+LIN ++ K++ TS PG T
Sbjct: 167 GVTNVGKSTLINRIIKEITGEKDVITTSRFPGTT 200
>gnl|CDD|183406 PRK12288, PRK12288, GTPase RsgA; Reviewed.
Length = 347
Score = 32.1 bits (74), Expect = 0.12
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 34 FSGRSNVGKSSLINIL 49
F G+S VGKSSLIN L
Sbjct: 210 FVGQSGVGKSSLINAL 225
Score = 26.0 bits (58), Expect = 7.3
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 154 IVLTKIDKLSPTTAQETLEKTKYLIRN--YPTAHPEVIPTSSVKRKGIEVLRKAILETIN 211
IVL KID L + + + RN Y V+ SS +G+E L A+ I+
Sbjct: 155 IVLNKIDLLDDEGRAF-VNEQLDIYRNIGYR-----VLMVSSHTGEGLEELEAALTGRIS 208
>gnl|CDD|172963 PRK14490, PRK14490, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MobA;
Provisional.
Length = 369
Score = 31.6 bits (72), Expect = 0.16
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 29 PPEIAFSGRSNVGKSSLINILVNR 52
P EIAF G S GK++LI LV R
Sbjct: 5 PFEIAFCGYSGSGKTTLITALVRR 28
>gnl|CDD|161878 TIGR00437, feoB, ferrous iron transporter FeoB. FeoB (773 amino
acids in E. coli), a cytoplasmic membrane protein
required for iron(II) update, is encoded in an operon
with FeoA (75 amino acids), which is also required, and
is regulated by Fur. There appear to be two copies in
Archaeoglobus fulgidus and Clostridium acetobutylicum.
Length = 591
Score = 31.2 bits (71), Expect = 0.19
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 36 GRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPG 93
G NVGKS+L N L N PG T V K L + +VD+PG
Sbjct: 1 GNPNVGKSTLFNALTGAN--QTVGNWPGVT------VEKKEGKLGFQGEDIEIVDLPG 50
Score = 27.8 bits (62), Expect = 2.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 188 VIPTSSVKRKGIEVLRKAILETINY 212
V+PTS+ + +GIE L+ AI + I
Sbjct: 132 VVPTSATEGRGIERLKDAIRKAIGL 156
>gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation
factor; Provisional.
Length = 614
Score = 31.2 bits (71), Expect = 0.23
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 154 IVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAIL 207
+ LTK D++ E + K ++R Y A ++ T++ + +GI+ LR+ +L
Sbjct: 109 VALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLL 162
>gnl|CDD|183416 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 31.0 bits (71), Expect = 0.23
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 154 IVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILETIN 211
+V KID L +E E+ K ++ P V S+ G++ L ++ I
Sbjct: 280 LVFNKIDLLDE---EEAEERAKAIVEALGWEGP-VYLISAASGLGVKELCWDLMTFIE 333
>gnl|CDD|179703 PRK04000, PRK04000, translation initiation factor IF-2 subunit
gamma; Validated.
Length = 411
Score = 30.6 bits (70), Expect = 0.35
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 154 IVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILETI 210
IV KID +S A E E+ K ++ + +IP S++ + I+ L +AI E I
Sbjct: 144 IVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 28.4 bits (64), Expect = 1.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 17/69 (24%)
Query: 32 IAFSGRSNVGKSSLINILVNRKNLA----RTSNAPGR--TQHLNFFVPKDFSNLKNNLPA 85
+A G S VGKS+L+N L+ + R ++ GR T H LP+
Sbjct: 198 VALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHP----------LPS 247
Query: 86 MA-LVDMPG 93
L+D PG
Sbjct: 248 GGLLIDTPG 256
>gnl|CDD|184387 PRK13908, PRK13908, putative recombination protein RecO;
Provisional.
Length = 204
Score = 28.0 bits (63), Expect = 2.0
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 168 QETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVL 202
E +E L R + AHP I + S + + I+
Sbjct: 145 DEKIENEIALARAFLPAHPSCIKSKSFELEKIKEF 179
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 27.9 bits (63), Expect = 2.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 32 IAFSGRSNVGKSSLINIL 49
IA G S GK+SL+N L
Sbjct: 379 IALVGPSGAGKTSLLNAL 396
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 27.5 bits (62), Expect = 2.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 36 GRSNVGKSSLINIL 49
GRS GK+SLIN +
Sbjct: 31 GRSGAGKTSLINAI 44
>gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 27.4 bits (62), Expect = 3.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 32 IAFSGRSNVGKSSLINILVNRKN 54
I SG S GKS+L+ L+ R
Sbjct: 8 IVLSGPSGAGKSTLVKALLERDP 30
>gnl|CDD|130550 TIGR01486, HAD-SF-IIB-MPGP, mannosyl-3-phosphoglycerate phosphatase
family. This small group of proteins is a member of the
IIB subfamily (TIGR01484) of the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolases.
Several members of this family from thermophiles (and
from Dehalococcoides ethenogenes) are now known to act
as mannosyl-3-phosphoglycerate (MPG) phosphatase. In
these cases, the enzyme acts after MPG synthase to make
the compatible solute mannosylglycerate. We propose that
other mesophilic members of this family do not act as
mannosyl-3-phosphoglycerate phosphatase. A member of
this family is found in Escherichia coli, which appears
to lack MPG synthase. Mannosylglycerate is imported in
E. coli by phosphoenolpyruvate-dependent transporter
(PubMed:14645248), but it appears the phosphorylation is
not on the glycerate moiety, that the phosphorylated
import is degraded by an alpha-mannosidase from an
adjacent gene, and that E. coli would have no pathway to
obtain MPG.
Length = 256
Score = 27.0 bits (60), Expect = 3.5
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 14/60 (23%)
Query: 154 IVLTKIDK-------LSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAI 206
+ T +D A+E LE+ + L P VIP +S +E LRK +
Sbjct: 1 WIFTDLDGTLLDPHGYDWGPAKEVLERLQEL--GIP-----VIPCTSKTAAEVEYLRKEL 53
>gnl|CDD|178922 PRK00192, PRK00192, mannosyl-3-phosphoglycerate phosphatase;
Reviewed.
Length = 273
Score = 27.2 bits (61), Expect = 3.7
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 14/60 (23%)
Query: 154 IVLTKIDK-------LSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAI 206
+V T +D S A+ L+ K VIP +S +EVLRK +
Sbjct: 6 LVFTDLDGTLLDHHTYSYEPAKPALKALK-------EKGIPVIPCTSKTAAEVEVLRKEL 58
>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional.
Length = 334
Score = 27.1 bits (60), Expect = 3.7
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 16 RGVPEIGLLPKAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRT---QHLNFFV 72
R E P G + G S VGKSSL++++V ++AR G T +H+ +
Sbjct: 8 RENKEQNGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGS 67
Query: 73 PKDFSN 78
P SN
Sbjct: 68 PGSSSN 73
>gnl|CDD|151224 pfam10744, Med1, Mediator of RNA polymerase II transcription
subunit 1. Mediator complexes are basic necessities for
linking transcriptional regulators to RNA polymerase II.
This domain, Med1, is conserved from plants to fungi to
humans and forms part of the Med9 submodule of the
Srb/Med complex. it is one of three subunits essential
for viability of the whole organism via its role in
environmentally-directed cell-fate decisions. Med1 is
part of the tail region of the Mediator complex.
Length = 375
Score = 27.0 bits (60), Expect = 3.8
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 4/68 (5%)
Query: 8 TKSAWIFLRG----VPEIGLLPKAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPG 63
+F VP + K P + ++NL + PG
Sbjct: 257 VDLPALFSLKLNDPVPNRRFVAKLEPITDLPILGLLLQSEKQTEGDRIKRNLVSLTQFPG 316
Query: 64 RTQHLNFF 71
+ QH F
Sbjct: 317 KEQHCYTF 324
>gnl|CDD|162033 TIGR00770, Dcu, anaerobic c4-dicarboxylate membrane transporter
family protein. These proteins are members of th
C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most
proteins in this family have 12 GES predicted
transmembrane regions; however one member has 10
experimentally determined transmembrane regions with
both the N- and C-termini localized to the periplasm.
The two Escherichia coli proteins, DcuA and DcuB,
transport aspartate, malate, fumarate and succinate, and
function as antiporters with any two of these
substrates. Since DcuA is encoded in an operon with the
gene for aspartase, and DcuB is encoded in an operon
with the gene for fumarase, their physiological
functions may be to catalyze aspartate:fumarate and
fumarate:malate exchange during the anaerobic
utilization of aspartate and fumarate, respectively.
Length = 430
Score = 26.6 bits (59), Expect = 4.8
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 10 SAWIFLRGVPEIGLLPKAGPPEIAFSGRSNVGKSSLINIL 49
S WIFL GV + L A F G+ +G I +
Sbjct: 223 SVWIFLGGVVAVVLYAAAISKRPGFVGKPILGMDHAIVMF 262
>gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP;
Provisional.
Length = 158
Score = 26.5 bits (58), Expect = 5.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 32 IAFSGRSNVGKSSLINILVNRKNLARTSNA 61
IAF G GK++L N L LAR + A
Sbjct: 4 IAFVGAVGAGKTTLFNALQGNYTLARKTQA 33
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 26.6 bits (59), Expect = 5.5
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 21 IGLLPKAGPPEIAFSGRSNVGKSSLINIL 49
I L+ + G +A GRS GKS+L+N++
Sbjct: 351 ISLVIEPGE-TVALVGRSGSGKSTLVNLI 378
>gnl|CDD|130799 TIGR01738, bioH, putative pimeloyl-BioC--CoA transferase BioH.
This CoA-binding enzyme is required for the production
of pimeloyl-coenzyme A, the substrate of the BioF
protein early in the biosynthesis of biotin. Its exact
function is unknown, but is proposed in ref 2. This
enzyme belongs to the alpha/beta hydrolase fold family
(pfam model pfam00561). Members of this family are
restricted to the Proteobacteria.
Length = 245
Score = 26.3 bits (58), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 76 FSNLKNNLPA---MALVDMPGYGYAR 98
F L L A + LVD+PG+G +R
Sbjct: 20 FRCLDEELSAHFTLHLVDLPGHGRSR 45
>gnl|CDD|183183 PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional.
Length = 318
Score = 25.8 bits (57), Expect = 7.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 115 LSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSY--QIVLTKID 160
L +R L V L+D H +Q++Q F+ + + V Y +I+LTK D
Sbjct: 117 LCQRYLLDGVIALVDAVHADEQMNQ--FT-IAQSQVGYADRILLTKTD 161
>gnl|CDD|179925 PRK05077, frsA, fermentation/respiration switch protein; Reviewed.
Length = 414
Score = 26.0 bits (58), Expect = 7.8
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Query: 69 NFFVPKDFSNLKNNLPAMALVDMPGYGYA 97
++ P+ AM +DMP G++
Sbjct: 216 DYLAPRGI--------AMLTIDMPSVGFS 236
>gnl|CDD|128368 smart00053, DYNc, Dynamin, GTPase. Large GTPases that mediate
vesicle trafficking. Dynamin participates in the
endocytic uptake of receptors, associated ligands, and
plasma membrane following an exocytic event.
Length = 240
Score = 26.0 bits (57), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 30 PEIAFSGRSNVGKSSLINILVNRKNLARTS 59
P+IA G + GKSS++ V R L R S
Sbjct: 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGS 56
>gnl|CDD|185557 PTZ00327, PTZ00327, eukaryotic translation initiation factor 2
gamma subunit; Provisional.
Length = 460
Score = 25.7 bits (57), Expect = 8.0
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 154 IVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVL 202
I+ KID + AQ+ E+ + ++ + +IP S+ + I+V+
Sbjct: 176 ILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVV 224
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 26.0 bits (57), Expect = 8.3
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 16 RGVPEIGLLPKAGPPEIAFSGRSNVGKSSLINIL 49
+GV ++ KAG +A G + GK++LIN+L
Sbjct: 349 QGVFDVSFEAKAGQ-TVAIVGPTGAGKTTLINLL 381
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 25.8 bits (57), Expect = 8.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 32 IAFSGRSNVGKSSLINILVNR 52
+A G S GK++L+N L R
Sbjct: 54 LAVMGSSGAGKTTLMNALAFR 74
>gnl|CDD|185530 PTZ00258, PTZ00258, GTP-binding protein; Provisional.
Length = 390
Score = 25.7 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 36 GRSNVGKSSLINILVNRKNLARTSNAP 62
G NVGKS+ N L K N P
Sbjct: 28 GLPNVGKSTTFNALC--KQQVPAENFP 52
>gnl|CDD|178630 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing
protein; Provisional.
Length = 697
Score = 25.6 bits (56), Expect = 10.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 88 LVDMPGYGYARAPKKNVDSWGGLIVRY 114
++ + R P+KN+ SW LI Y
Sbjct: 375 RMEDARNVFDRMPRKNLISWNALIAGY 401
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.399
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,455,933
Number of extensions: 212116
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 76
Length of query: 212
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,071,361
Effective search space: 500777403
Effective search space used: 500777403
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)