HHsearch alignment for GI: 254780485 and conserved domain: COG0119
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism].
Probab=94.28 E-value=0.46 Score=26.81 Aligned_cols=220 Identities=17% Similarity=0.174 Sum_probs=120.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC---CCCCHHHHHHHHCCCCCEE
Q ss_conf 0068579999999999649838997303688874428999998876213688324102---5699999998741576069
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL---GMLSFEQAQILSKAGLDYY 162 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~---g~~~~~~~~~Lk~aG~~~~ 162 (328)
T Consensus 19 ~~~s~e~Ki~Ia~~Ld~lGv~~IE~g--~p~~s~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i 93 (409)
T COG0119 19 VSFSVEEKIRIAKALDDLGVDYIEAG--FPVASPGDFEFVRAIAE---KAGLFICALIAALARAIKRDIEALLEAGVDRI 93 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHH---HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 95788999999999997699879972--78688546999999987---46863220223317867755999975799989
Q ss_pred EEECCCCHHHHHCCCCCCCHHH----HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEE
Q ss_conf 7513437777320588889899----999999999879855770786689899999999999974088886020541120
Q gi|254780485|r 163 NHNIDTSERFYPHVTTTHTFED----RLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIP 238 (328)
Q Consensus 163 ~~~let~~~~~~~~~~~~~~~~----~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p 238 (328)
T Consensus 94 ~if~~tSd~h~~~~~~-~t~~e~l~~~~~~v~~a~~~g~~~~~~~Ed~~rt~~e~l~~~~~~~~~~ga~--------~i~ 164 (409)
T COG0119 94 HIFIATSDLHLRYKLK-KTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGAD--------RIN 164 (409)
T ss_pred EEEECCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCC--------EEE
T ss_conf 9997478899998848-9999999999999999997397589875313367999999999999971994--------999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEHHHHHCH--HHHHHHHHHCCC---EEEECCEEECCCCCCHHH
Q ss_conf 487412445687989999999999996868-72142311565165--689999980998---899778665158889899
Q gi|254780485|r 239 IPGSKFEENKKVDPIEHVRIISVARILMPK-SRLRLAAGRAMMSD--ELQALCFFSGAN---SIFVGDTLLTAKNPSYNK 312 (328)
Q Consensus 239 ~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~-~~i~i~~~~~~~~~--~~~~~~L~~GaN---~~~~g~~~~t~~g~~~~~ 312 (328)
T Consensus 165 l~DT----vG~~~P~~~~~~i~~l~~~v~~~~~i~~H~-HND~G~AvANslaAv~aGa~~v~~TvnGiG-ERaGna~l~~ 238 (409)
T COG0119 165 LPDT----VGVATPNEVADIIEALKANVPNKVILSVHC-HNDLGMAVANSLAAVEAGADQVEGTVNGIG-ERAGNAALEE 238 (409)
T ss_pred ECCC----CCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCHHHHHHHHHHHCCCCEEEEECCCCE-ECCCCCCHHH
T ss_conf 7787----686587999999999998378887388983-698565999999999848838999645614-3366654799
Q ss_pred HHH---HHHHCCCCCC
Q ss_conf 999---9998298532
Q gi|254780485|r 313 DTI---LFNRLGLIPD 325 (328)
Q Consensus 313 ~~~---~i~~~G~~P~ 325 (328)
T Consensus 239 v~~~l~~~~~~~~~~~ 254 (409)
T COG0119 239 VVLALALRKDYGVDTG 254 (409)
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999999765187568