HHsearch alignment for GI: 254780485 and conserved domain: COG1509
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism].
Probab=98.42 E-value=0.00013 Score=50.54 Aligned_cols=193 Identities=13% Similarity=0.160 Sum_probs=109.1
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCC--CHHHHHHHHHHHC
Q ss_conf 645307868342321243354777564100068579999999999649-8389973036888744--2899999887621
Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENG-ATRYCMGAAWREPKER--DLSIIVDMIKGVK 133 (328)
Q Consensus 57 ~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G-~~~~~l~~~~~~~~~~--~~~~~~e~i~~i~ 133 (328)
T Consensus 114 Lll~-t~~C~vyCRyC-fRr~~~~~~~~~--~~~~~~~~al~YIa~hPeI~eV-llSGGDPL~ls~~~L~~ll~~L~~Ip 188 (369)
T COG1509 114 LLLV-TGVCAVYCRYC-FRRRFVGQDNQG--FNKEEWDKALDYIAAHPEIREV-LLSGGDPLSLSDKKLEWLLKRLRAIP 188 (369)
T ss_pred EEEE-CCCCCCEEEEC-CCCCCCCCCCCC--CCHHHHHHHHHHHHCCCHHHEE-EECCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9996-48664521000-134555666566--7889999999999739516517-74078756368899999999875489
Q ss_pred CC-CCCEE-----EECCCCCHHHHHHHHCCCCCEEEE-ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC-CCEE-E
Q ss_conf 36-88324-----102569999999874157606975-13437777320588889899999999999879855-7707-8
Q gi|254780485|r 134 SL-GLETC-----MTLGMLSFEQAQILSKAGLDYYNH-NIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKV-CCGG-I 204 (328)
Q Consensus 134 ~~-~~~i~-----~~~g~~~~~~~~~Lk~aG~~~~~~-~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~-~sg~-l 204 (328)
T Consensus 189 Hv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~Ei---------t~e~~~A~~~L~~aGv~l~NQsVLL 259 (369)
T COG1509 189 HVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNEI---------TPEAREACAKLRDAGVPLLNQSVLL 259 (369)
T ss_pred CEEEEEEECCCCEECHHHHCHHHHHHHHCCCCEEEEECCCCCHHHC---------CHHHHHHHHHHHHCCCEEECCHHEE
T ss_conf 6469986246743154440699999872358607998035883546---------8999999999997595653241011
Q ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 6689899999999999974088886020541120487412445687989999999999996868
Q gi|254780485|r 205 LGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPK 268 (328)
Q Consensus 205 ~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~ 268 (328)
T Consensus 260 rGVND~~evl~~L~~~L~~~gV~PYYl~--~~D~~~G~---~hfr~~i~~~~~i~~~lr~~~SG 318 (369)
T COG1509 260 RGVNDDPEVLKELSRALFDAGVKPYYLH--QLDLVQGA---AHFRVPIAEGLQIVEELRGRTSG 318 (369)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEE--CCCCCCCC---CCEECCHHHHHHHHHHHHHHCCC
T ss_conf 4667999999999999997488621785--16766772---33514099999999999975777