HHsearch alignment for GI: 254780485 and conserved domain: COG4018
>COG4018 Uncharacterized protein conserved in archaea [Function unknown].
Probab=95.72 E-value=0.052 Score=33.14 Aligned_cols=104 Identities=25% Similarity=0.320 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98999999999998798557707866898999999999999740888860205411204874124456879899999999
Q gi|254780485|r 181 TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIIS 260 (328)
Q Consensus 181 ~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iA 260 (328)
T Consensus 204 PLeEmk~VaEtArk~GkGvea--I~hvgDGyDdli~G~kA~ve~~vDv-------f-vvEGgPFNrA~-dRL~AFa~Ava 272 (505)
T COG4018 204 PLEEMKRVAETARKSGKGVEA--ILHVGDGYDDLIDGLKAAVEEVVDV-------F-VVEGGPFNRAE-DRLSAFARAVA 272 (505)
T ss_pred CHHHHHHHHHHHHHHCCCCEE--EEEECCCCHHHHHHHHHHHHHCCCE-------E-EECCCCCCHHH-HHHHHHHHHHH
T ss_conf 789999999999870888216--9882477077888999998744838-------9-98178754166-78999998787
Q ss_pred HHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEEC
Q ss_conf 999968687214231156516568999998099889977
Q gi|254780485|r 261 VARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVG 299 (328)
Q Consensus 261 i~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g 299 (328)
T Consensus 273 a~Ril~pGkvVaTNGAYE----DEcrvGLRaGLN~iltG 307 (505)
T COG4018 273 ACRILAPGKVVATNGAYE----DECRVGLRAGLNGILTG 307 (505)
T ss_pred HHEECCCCCEEEECCCCH----HHHHHHHHHCHHHHHCC
T ss_conf 640104783784067413----66787677320156507