HHsearch alignment for GI: 254780485 and conserved domain: TIGR00048

>TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function..
Probab=97.78  E-value=0.0018  Score=42.92  Aligned_cols=195  Identities=11%  Similarity=0.263  Sum_probs=100.9

Q ss_pred             EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HC---------CCEEEEEECCCCCCCCC
Q ss_conf             569998645307868342321243354777564100068579999999999-64---------98389973036888744
Q gi|254780485|r   51 HIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAK-EN---------GATRYCMGAAWREPKER  120 (328)
Q Consensus        51 ~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~-~~---------G~~~~~l~~~~~~~~~~  120 (328)
T Consensus       120 k~TvCVSsQv---GC~~~C~FC~---T~~gGf~RN--L~~~EIi~Qv~~~~k~~G~~~~~~erP~~nvV~MGmGE-PL~-  189 (378)
T TIGR00048       120 KATVCVSSQV---GCALGCTFCA---TAKGGFNRN--LEASEIIGQVLRVQKILGAAEETGERPVSNVVFMGMGE-PLL-  189 (378)
T ss_pred             CCCEEEEECC---CCCCCCCCCC---CCCCCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC-CCC-
T ss_conf             7626871023---5422551033---457875214--51033899999999983455777665404788746787-101-


Q ss_pred             CHHHHHHHHHHHCC-CC--C---CEEEE-CCCCCHHHHHHHHCCCCCE-EEEECCC-CHHHHHCCCC---CCCHHHHHHH
Q ss_conf             28999998876213-68--8---32410-2569999999874157606-9751343-7777320588---8898999999
Q gi|254780485|r  121 DLSIIVDMIKGVKS-LG--L---ETCMT-LGMLSFEQAQILSKAGLDY-YNHNIDT-SERFYPHVTT---THTFEDRLQT  188 (328)
Q Consensus       121 ~~~~~~e~i~~i~~-~~--~---~i~~~-~g~~~~~~~~~Lk~aG~~~-~~~~let-~~~~~~~~~~---~~~~~~~l~~  188 (328)
T Consensus       190 Nl~~vv~a~ei~n~~~g~~is~r~~T~STsGv~~k--i~~Lad~~l~V~lAiSLHApn~~~R~~l~P~nk~Y~ie~ll~~  267 (378)
T TIGR00048       190 NLNEVVKALEILNDDVGLGISKRRITISTSGVVPK--IDELADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAA  267 (378)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHH--HHHHCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf             17999999998742220365673378873571458--8885132110334455328871124440650014786799999


Q ss_pred             HH-HHHHCCC---CCCC--EEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99-9998798---5577--07866898999999999999740888860205411204874124456879899999999
Q gi|254780485|r  189 LE-NVRKSGI---KVCC--GGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIIS  260 (328)
Q Consensus       189 ~~-~a~~~G~---~~~s--g~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iA  260 (328)
T Consensus       268 vr~Y~~~~~~n~GRV~fEY~Ll~~vND~~~HA~~La~lL~g~~c---kvNLIP~NP~~e~~Y~R~s~~~i~~F~~~L~  342 (378)
T TIGR00048       268 VRRYLEKTGRNQGRVTFEYVLLDGVNDQVEHAEELAELLKGVKC---KVNLIPFNPFPEADYERPSNEQIDRFAKVLK  342 (378)
T ss_pred             HHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCC---EEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             98758642767772688742002468858899999998569985---0401213787988888880889999999862