HHsearch alignment for GI: 254780485 and conserved domain: TIGR00510
>TIGR00510 lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic acid is a covalently bound disulphide-containing cofactor required for function of the pyruvate dehydrogenase, alpha-ketoglutarate dehydrogenase, and glycine cleavage enzyme complexes of Escherichia coli. Two genes, lipA and lipB, are involved in lipoic acid biosynthesis or metabolism. LipA is required for the insertion of the first sulphur into the octanoic acid backbone. LipB functions downstream of LipA, but its role in lipoic acid metabolism remains unclear . Lipoate synthase (or lipoic acid synthetase) catalyses the formation of alpha-(+)-lipoic acid, required for lipoate biosynthesis.; GO: 0016992 lipoate synthase activity, 0009107 lipoate biosynthetic process.
Probab=99.25 E-value=2.3e-10 Score=89.08 Aligned_cols=196 Identities=17% Similarity=0.255 Sum_probs=146.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 78683423212433547775641000685799999999996498389973036888-74428999998876213688324
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-KERDLSIIVDMIKGVKSLGLETC 140 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~e~i~~i~~~~~~i~ 140 (328)
T Consensus 76 g~~c~~~c~fc~~~~~-~~p~----~pdp~ep~~~~~~~~~~~l~~~~~~~~~~ddl~dgg~~~~~~~~~~~~~~~p~~~ 150 (310)
T TIGR00510 76 GDICTRRCPFCDVAHG-RNPL----PPDPEEPEKLAETIKDLGLKYVVITSVDRDDLEDGGAGHLAECVEALREKLPNIK 150 (310)
T ss_pred HHHHHCCCCCCCCCCC-CCCC----CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 1365224763102246-7789----8873322568999987305535775122000234534678999999875245413
Q ss_pred EEC----CCC-CHHHHHHHHCCCCCEEEEECCCCHHHHHCCCC-CCCHHHHHHHHHHHHHC--CCCCCCEEEECCCCCHH
Q ss_conf 102----569-99999987415760697513437777320588-88989999999999987--98557707866898999
Q gi|254780485|r 141 MTL----GML-SFEQAQILSKAGLDYYNHNIDTSERFYPHVTT-THTFEDRLQTLENVRKS--GIKVCCGGILGLGEMID 212 (328)
Q Consensus 141 ~~~----g~~-~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~-~~~~~~~l~~~~~a~~~--G~~~~sg~l~G~gEt~e 212 (328)
T Consensus 151 ~e~l~~df~g~~~~~~~~~~~~~~~~~~hn~e~~~~~~~~~~~~~~~y~~~l~~l~~~~~~~p~~~~k~g~~~glge~~~ 230 (310)
T TIGR00510 151 IETLVPDFRGRDLKALDILLDAPPDVYNHNLETVPRLTPFVRPRGATYRWSLKLLERAKETLPNLPTKSGLMVGLGETNE 230 (310)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHH
T ss_conf 21001320104689999886246134530112334543333013321688999999988750321011220110475247
Q ss_pred HHHHHHHHHHHCCCCCCEEECC-CEEEC-CCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999997408888602054-11204-8741244568798999999999999
Q gi|254780485|r 213 DRIDMLLTLANLSTPPESIPIN-LLIPI-PGSKFEENKKVDPIEHVRIISVARI 264 (328)
Q Consensus 213 eri~~l~~lr~l~~~~~~v~~~-~~~p~-~gt~l~~~~~~~~~e~lr~iAi~RL 264 (328)
T Consensus 231 ~~~~~~~dl~~~g~~--~~~~g~y~~p~~~h~p~~~y~~p~~fd~~~~~~~~~g 282 (310)
T TIGR00510 231 EILQTLKDLRDHGVT--VLTLGQYLRPSRRHLPVKRYVSPEEFDYWKERALELG 282 (310)
T ss_pred HHHHHHHHHHHCCCC--EEECCCHHCCHHHCCCCHHCCCCCHHHHHHHHHHHHH
T ss_conf 899999989863740--5650101052001253000257402467887776510