HHsearch alignment for GI: 254780485 and conserved domain: TIGR00510

>TIGR00510 lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic acid is a covalently bound disulphide-containing cofactor required for function of the pyruvate dehydrogenase, alpha-ketoglutarate dehydrogenase, and glycine cleavage enzyme complexes of Escherichia coli. Two genes, lipA and lipB, are involved in lipoic acid biosynthesis or metabolism. LipA is required for the insertion of the first sulphur into the octanoic acid backbone. LipB functions downstream of LipA, but its role in lipoic acid metabolism remains unclear . Lipoate synthase (or lipoic acid synthetase) catalyses the formation of alpha-(+)-lipoic acid, required for lipoate biosynthesis.; GO: 0016992 lipoate synthase activity, 0009107 lipoate biosynthetic process.
Probab=99.25  E-value=2.3e-10  Score=89.08  Aligned_cols=196  Identities=17%  Similarity=0.255  Sum_probs=146.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf             78683423212433547775641000685799999999996498389973036888-74428999998876213688324
Q gi|254780485|r   62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-KERDLSIIVDMIKGVKSLGLETC  140 (328)
Q Consensus        62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~e~i~~i~~~~~~i~  140 (328)
T Consensus        76 g~~c~~~c~fc~~~~~-~~p~----~pdp~ep~~~~~~~~~~~l~~~~~~~~~~ddl~dgg~~~~~~~~~~~~~~~p~~~  150 (310)
T TIGR00510        76 GDICTRRCPFCDVAHG-RNPL----PPDPEEPEKLAETIKDLGLKYVVITSVDRDDLEDGGAGHLAECVEALREKLPNIK  150 (310)
T ss_pred             HHHHHCCCCCCCCCCC-CCCC----CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             1365224763102246-7789----8873322568999987305535775122000234534678999999875245413


Q ss_pred             EEC----CCC-CHHHHHHHHCCCCCEEEEECCCCHHHHHCCCC-CCCHHHHHHHHHHHHHC--CCCCCCEEEECCCCCHH
Q ss_conf             102----569-99999987415760697513437777320588-88989999999999987--98557707866898999
Q gi|254780485|r  141 MTL----GML-SFEQAQILSKAGLDYYNHNIDTSERFYPHVTT-THTFEDRLQTLENVRKS--GIKVCCGGILGLGEMID  212 (328)
Q Consensus       141 ~~~----g~~-~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~-~~~~~~~l~~~~~a~~~--G~~~~sg~l~G~gEt~e  212 (328)
T Consensus       151 ~e~l~~df~g~~~~~~~~~~~~~~~~~~hn~e~~~~~~~~~~~~~~~y~~~l~~l~~~~~~~p~~~~k~g~~~glge~~~  230 (310)
T TIGR00510       151 IETLVPDFRGRDLKALDILLDAPPDVYNHNLETVPRLTPFVRPRGATYRWSLKLLERAKETLPNLPTKSGLMVGLGETNE  230 (310)
T ss_pred             EEEECCCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHH
T ss_conf             21001320104689999886246134530112334543333013321688999999988750321011220110475247


Q ss_pred             HHHHHHHHHHHCCCCCCEEECC-CEEEC-CCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9999999997408888602054-11204-8741244568798999999999999
Q gi|254780485|r  213 DRIDMLLTLANLSTPPESIPIN-LLIPI-PGSKFEENKKVDPIEHVRIISVARI  264 (328)
Q Consensus       213 eri~~l~~lr~l~~~~~~v~~~-~~~p~-~gt~l~~~~~~~~~e~lr~iAi~RL  264 (328)
T Consensus       231 ~~~~~~~dl~~~g~~--~~~~g~y~~p~~~h~p~~~y~~p~~fd~~~~~~~~~g  282 (310)
T TIGR00510       231 EILQTLKDLRDHGVT--VLTLGQYLRPSRRHLPVKRYVSPEEFDYWKERALELG  282 (310)
T ss_pred             HHHHHHHHHHHCCCC--EEECCCHHCCHHHCCCCHHCCCCCHHHHHHHHHHHHH
T ss_conf             899999989863740--5650101052001253000257402467887776510