HHsearch alignment for GI: 254780485 and conserved domain: TIGR01290
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=98.62 E-value=3.3e-06 Score=61.31 Aligned_cols=196 Identities=20% Similarity=0.286 Sum_probs=133.1
Q ss_pred EEEEEEECCCCCCCCCCCCC--CCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCCHHHHHHHH
Q ss_conf 99864530786834232124--3354777-56410006857999999999964983899730-36888744289999988
Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCN--QSVHNKS-KLKASKLINVDQVLKEAKNAKENGATRYCMGA-AWREPKERDLSIIVDMI 129 (328)
Q Consensus 54 ~~~~in~~TN~C~~~C~fCa--f~~~~~~-~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~-~~~~~~~~~~~~~~e~i 129 (328)
T Consensus 24 ARMH~AV-ApACNiQCNYCNRKyDC~NESRPGV~S~~LtP~qA~~k~~~VA~~-i~QLSVvGIAGPGDpLan~~~Tf~Tl 101 (461)
T TIGR01290 24 ARMHLAV-APACNIQCNYCNRKYDCANESRPGVVSELLTPEQALAKVKAVAAE-IPQLSVVGIAGPGDPLANIKKTFQTL 101 (461)
T ss_pred HHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCHHHH
T ss_conf 1113421-443345545568641667888876201346848999999999850-67531563257886245750008999
Q ss_pred HHHCC--CCCCEEEE-CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHH---------------HHHHHHH
Q ss_conf 76213--68832410-25699999998741576069751343-777732058888989---------------9999999
Q gi|254780485|r 130 KGVKS--LGLETCMT-LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFE---------------DRLQTLE 190 (328)
Q Consensus 130 ~~i~~--~~~~i~~~-~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~---------------~~l~~~~ 190 (328)
T Consensus 102 ~~v~~~~PDvklCLSTNGL~LP~~vDrlvdlgvdHVTiTiN~iDP~vG~~IYpWv~y~G~RY~Gr~Aa~lL~erQl~G~~ 181 (461)
T TIGR01290 102 ELVAREVPDVKLCLSTNGLALPEHVDRLVDLGVDHVTITINAIDPEVGEKIYPWVAYEGKRYTGREAAKLLIERQLEGLE 181 (461)
T ss_pred HHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHCEECCCEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99985178214200126563134652464238881798831406355103065233267333548999998999999999
Q ss_pred HHHHCCC--CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECC--CCCCCC--CCCCCHHHH
Q ss_conf 9998798--5577078668989999999999997408888602054112048--741244--568798999
Q gi|254780485|r 191 NVRKSGI--KVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIP--GSKFEE--NKKVDPIEH 255 (328)
Q Consensus 191 ~a~~~G~--~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~--gt~l~~--~~~~~~~e~ 255 (328)
T Consensus 182 ~L~ergiL~KvNSvlIPGi--ND~HL~eVsk~vk~~GAfLHNv--mPLis~PeHGt~ygl~Gq~~P~~~el 248 (461)
T TIGR01290 182 KLTERGILVKVNSVLIPGI--NDEHLVEVSKKVKELGAFLHNV--MPLISAPEHGTVYGLNGQRAPAPSEL 248 (461)
T ss_pred HHHHCCCEEEECCEECCCC--CCHHHHHHHHHHHCCCCHHCCC--CCCEECCCCCCCCCCCCCCCCCHHHH
T ss_conf 9973885488800643898--8178999877751046400054--42101489883116787888898999