HHsearch alignment for GI: 254780485 and conserved domain: TIGR01574
>TIGR01574 miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme MiaB; InterPro: IPR006463 These sequences are homologs of the MiaB enzyme responsible for the modification of the isopentenylated adenine-37 base of most bacterial and eukaryotic tRNAs that read codons beginning with uracil (all except tRNA(I,V) Ser). Adenine-37 is next to the anticodon on the 3 side in these tRNAs, and lack of modification at this site leads to an increased spontaneous mutation frequency. Isopentenylated A-37 is modified by methylthiolation at position 2, either by MiaB alone or in concert with a separate methylase yet to be discovered (MiaC?) , , ..
Probab=99.28 E-value=8.1e-10 Score=85.45 Aligned_cols=192 Identities=18% Similarity=0.230 Sum_probs=139.9
Q ss_pred EEEEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC-C---------CCCCC
Q ss_conf 999864530786834232124--33547775641000685799999999996498389973036-8---------88744
Q gi|254780485|r 53 QLSKLLNIKTGGCPENCGYCN--QSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAW-R---------EPKER 120 (328)
Q Consensus 53 ~~~~~in~~TN~C~~~C~fCa--f~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~-~---------~~~~~ 120 (328)
T Consensus 154 ~~~sfv~I-m~GCdkfCtYCiVPYtRG-----~E-~Sr~~~~Il~Ev~~l~~~G~kEi~LLGQNVN~YRG~~frne~~~~ 226 (456)
T TIGR01574 154 KFKSFVNI-MEGCDKFCTYCIVPYTRG-----EE-ISRPLDDILQEVQKLAEKGVKEITLLGQNVNAYRGKDFRNEGKTV 226 (456)
T ss_pred CCEEEEEC-CCCCCCCCCEEECCCCCC-----CC-CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEE
T ss_conf 42252403-147688545466153048-----20-125744699999999865864874036530111587522588673
Q ss_pred CHHHHHHHHHH---HCCC---CCCEEEECCCCCHHHHHHHHCCC--CCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 28999998876---2136---88324102569999999874157--6069751343-77773205888898999999999
Q gi|254780485|r 121 DLSIIVDMIKG---VKSL---GLETCMTLGMLSFEQAQILSKAG--LDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLEN 191 (328)
Q Consensus 121 ~~~~~~e~i~~---i~~~---~~~i~~~~g~~~~~~~~~Lk~aG--~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~ 191 (328)
T Consensus 227 ~f~dLL~~l~rrCe~~~~i~RIRFtsSHP~~~~D~liev~a~~~~l~~~~HLPvQsGS~~vLk~M~R~Yt~e~Y~~~v~K 306 (456)
T TIGR01574 227 DFADLLRELARRCEVKDGIERIRFTSSHPKDFDDDLIEVLAKEPKLCKLLHLPVQSGSSEVLKLMKRKYTRERYLELVRK 306 (456)
T ss_pred CHHHHHHHHHHHCCHHHCCCCEEECCCCCCCCCHHHHHHHHCCCCEEEEECCCCEECHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 66999999987510221585113137878765446878873789466664375200707998510775568999999999
Q ss_pred HHHC--CCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHH
Q ss_conf 9987--985577078668-9899999999999974088886020541120487412445687989
Q gi|254780485|r 192 VRKS--GIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPI 253 (328)
Q Consensus 192 a~~~--G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~ 253 (328)
T Consensus 307 Lk~~~Pnv~lStDiivGFPGEt~edFE~Tl~l~~~V~F--d~~f~F~Ys~ReGTpAa~m~d~vp~ 369 (456)
T TIGR01574 307 LKEAVPNVSLSTDIIVGFPGETEEDFEETLDLLREVEF--DSAFSFIYSPREGTPAADMPDDVPE 369 (456)
T ss_pred HHHHCCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCH
T ss_conf 98737871212453673687784668999999852262--4123344138676855678788648