HHsearch alignment for GI: 254780485 and conserved domain: TIGR02494
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=95.82 E-value=0.17 Score=29.73 Aligned_cols=197 Identities=16% Similarity=0.181 Sum_probs=120.5
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----HC-CCEEEEEECCCCCCCCCCHHHHH
Q ss_conf 69998645307868342321243354777564100068579999999999----64-98389973036888744289999
Q gi|254780485|r 52 IQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAK----EN-GATRYCMGAAWREPKERDLSIIV 126 (328)
Q Consensus 52 V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~----~~-G~~~~~l~~~~~~~~~~~~~~~~ 126 (328)
T Consensus 81 ~~~~~~~c~~Cg~C~~~Cp~~Al~~-------~G~~~tV~ev~~~~~~D~~fY~~SGGGvT--l-SGGE-P-l~Q~eF~~ 148 (305)
T TIGR02494 81 ISIRREKCTGCGKCTEACPSGALEI-------VGKEMTVEEVMRVVLRDSIFYRNSGGGVT--L-SGGE-P-LLQPEFAL 148 (305)
T ss_pred EEECCCCCCCCCCHHHCCCCHHHHE-------ECCCCCHHHHHHHHHHHHHHHHHCCCEEE--E-CCCC-C-CCCHHHHH
T ss_conf 1000017741110110384006420-------24514889999999865566651399067--3-4871-1-40158999
Q ss_pred HHHHHHCCCCCCEEEE-CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCC----CCCC
Q ss_conf 9887621368832410-25699999998741576069751343-7777320588889899999999999879----8557
Q gi|254780485|r 127 DMIKGVKSLGLETCMT-LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSG----IKVC 200 (328)
Q Consensus 127 e~i~~i~~~~~~i~~~-~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G----~~~~ 200 (328)
T Consensus 149 ~LL~~c~~~gihTAvET~gft~~~~~~~~~~~-~DLfL~DiK~~D~~~H~~~-tG~~N~~IL~NL~~L~~~~~~GG~~v~ 226 (305)
T TIGR02494 149 ALLKACRERGIHTAVETSGFTPWETIEKVLPY-VDLFLYDIKHLDDERHKEV-TGVDNELILENLEALLAAGKDGGKNVV 226 (305)
T ss_pred HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHH-HHHHHHHHHHCCCHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999975899467605568888999988887-7699872641180120553-389837899999999971788995589
Q ss_pred CEE--EECCCCCHHHHHHHHHHHHHCCCC-CCEEECCCEEE---C-------CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 707--866898999999999999740888-86020541120---4-------87412445687989999999999
Q gi|254780485|r 201 CGG--ILGLGEMIDDRIDMLLTLANLSTP-PESIPINLLIP---I-------PGSKFEENKKVDPIEHVRIISVA 262 (328)
Q Consensus 201 sg~--l~G~gEt~eeri~~l~~lr~l~~~-~~~v~~~~~~p---~-------~gt~l~~~~~~~~~e~lr~iAi~ 262 (328)
T Consensus 227 iR~PvIpG~Nds~~~i~a~~~f~~~~~~~N~~~i~LLPyH~lG~~KY~~LG~~~~~~~~~~~~~~e~~~~l~~~~ 301 (305)
T TIGR02494 227 IRIPVIPGFNDSEENIEAIAEFLRKLLPGNVKEIDLLPYHRLGENKYRQLGREYYPDSEIPDPAEEQLLELKEIF 301 (305)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 987204898989899999999999851789765674486055679998558867778888886667899999999