HHsearch alignment for GI: 254780485 and conserved domain: TIGR03278
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=97.38 E-value=0.014 Score=36.88 Aligned_cols=135 Identities=20% Similarity=0.189 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE----CCCCCHHHHHHHHCCCC
Q ss_conf 06857999999999964---983899730368887442899999887621368832410----25699999998741576
Q gi|254780485|r 87 LINVDQVLKEAKNAKEN---GATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMT----LGMLSFEQAQILSKAGL 159 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~---G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~----~g~~~~~~~~~Lk~aG~ 159 (328)
T Consensus 53 F~pl~~v~~~v~~~L~f~~~~~~kitISgGG-D~S--cYP~l~eL~~~l~~~~lpiHLGYTSGKGfd~~~~a~~li~~Gv 129 (404)
T TIGR03278 53 FIPPQVVLGEVQTSLGFRTGRDTKVTISGGG-DVS--CYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGV 129 (404)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCC-CCC--CCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCC
T ss_conf 7697999999998634567772289980798-844--1631999999998669835741237889898799999996797
Q ss_pred CEEEEE-CCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEE-CCCCCHHHHHHHHHHHHHCCC
Q ss_conf 069751-3437777320588889899999999999879855-770786-689899999999999974088
Q gi|254780485|r 160 DYYNHN-IDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKV-CCGGIL-GLGEMIDDRIDMLLTLANLST 226 (328)
Q Consensus 160 ~~~~~~-let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~-~sg~l~-G~gEt~eeri~~l~~lr~l~~ 226 (328)
T Consensus 130 ~EVtfTVFatDp~LR~ewM~D~~pE~SL~~L~~fc~~c-ev~~A~ViiPGV-NDGevL~kT~~~Le~wGa 197 (404)
T TIGR03278 130 REVSFTVFATDPELRREWMKDPTPEASLQCLRRFCESC-EVHAASVIIPGV-NDGDVLWKTCADLESWGA 197 (404)
T ss_pred CEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHEEEEEEECCC-CCHHHHHHHHHHHHHHCC
T ss_conf 37999986089899998716998688999999998441-113789980686-856999999999998387