HHsearch alignment for GI: 254780485 and conserved domain: TIGR03279
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.20 E-value=0.11 Score=30.84 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-EECCCCCCCCCCHHHHHHHHHHH-CCCCCCEE
Q ss_conf 86834232124335477756410006857999999999964983899-73036888744289999988762-13688324
Q gi|254780485|r 63 GGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYC-MGAAWREPKERDLSIIVDMIKGV-KSLGLETC 140 (328)
Q Consensus 63 N~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~-l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~ 140 (328)
T Consensus 82 r~C~N~C~FCFidQlP~GmR~sLY~KDDD--------------yRLSFL~GNfiTLTNl~e~D~~RIi~~rLSPl~ISVH 147 (433)
T TIGR03279 82 IQCNNRCPFCFIDQQPPGKRESLYLKDDD--------------YRLSFLYGSYLTLTNLPPAEWQRIEQLRLSPLYVSVH 147 (433)
T ss_pred HHCCCCCCEEEECCCCCCCCCCEEEECCC--------------EEEEEECCCEEEEECCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 33177785686466885554641462486--------------3453201525765179989999999825786389986
Q ss_pred EECC------------CCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCC-CHHHHHHHHHHHHHCC------CCCCC
Q ss_conf 1025------------699999998741576069751343777732058888-9899999999999879------85577
Q gi|254780485|r 141 MTLG------------MLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTH-TFEDRLQTLENVRKSG------IKVCC 201 (328)
Q Consensus 141 ~~~g------------~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~-~~~~~l~~~~~a~~~G------~~~~s 201 (328)
T Consensus 148 aT~pelR~~mL~n~~ag~il~~l~~L~~~gI~~h~Q---------IVLCPGiNDG~~L~rTi~DL~~~~~~~~P~v~Sva 218 (433)
T TIGR03279 148 ATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQ---------VVVCPGINDGKHLERTLRDLAQFHDGDWPTVLSVA 218 (433)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEE---------EEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 399899999876995789999999999769879847---------99879967669999899999986124688425777
Q ss_pred EEEECCC-----------CCHHHHHHHHHHHHHCC
Q ss_conf 0786689-----------89999999999997408
Q gi|254780485|r 202 GGILGLG-----------EMIDDRIDMLLTLANLS 225 (328)
Q Consensus 202 g~l~G~g-----------Et~eeri~~l~~lr~l~ 225 (328)
T Consensus 219 vVPVGlTk~R~~l~~l~~~~~e~A~~vi~~ve~~Q 253 (433)
T TIGR03279 219 VVPVGLTRFRPEEDELTPVTPECARRVIAQVEALQ 253 (433)
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 88324213578999872189999999999999999