HHsearch alignment for GI: 254780485 and conserved domain: TIGR03550

>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=100.00  E-value=0  Score=383.21  Aligned_cols=266  Identities=20%  Similarity=0.284  Sum_probs=213.7

Q ss_pred             EEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf             999864530-7868342321243354777564100068579999999999649838997303688874428999998876
Q gi|254780485|r   53 QLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKG  131 (328)
Q Consensus        53 ~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~  131 (328)
T Consensus         1 Ty~~N~~In~TNiC~~~C~FCaF~r~~~~--~~ay~ls~eei~~~~~ea~~~G~tEv~i~gG~~P~--~~~~~~~~~l~~   76 (322)
T TIGR03550         1 TYSRNVFIPLTRLCRNRCGYCTFRRPPGE--LEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPE--ERYPEAREWLAE   76 (322)
T ss_pred             CCCCCCCCCCCCCHHCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHH--HHHHHHHHHHHH
T ss_conf             99872156887203176967885168999--88774799999999999997798799964886800--349999999998


Q ss_pred             H-----------------CCCCCCEEEECCCCCHHHHHHHHC--CCCCEEEEECCC-CHH----HHHCCCCCCCHHHHHH
Q ss_conf             2-----------------136883241025699999998741--576069751343-777----7320588889899999
Q gi|254780485|r  132 V-----------------KSLGLETCMTLGMLSFEQAQILSK--AGLDYYNHNIDT-SER----FYPHVTTTHTFEDRLQ  187 (328)
Q Consensus       132 i-----------------~~~~~~i~~~~g~~~~~~~~~Lk~--aG~~~~~~~let-~~~----~~~~~~~~~~~~~~l~  187 (328)
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~t~eel~~Lk~~~aglg~---~~e~~ae~l~~~vr~~~~P~K~~~~~l~  153 (322)
T TIGR03550        77 MGYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGL---MLETTSERLCKGEAHYGSPGKDPAVRLE  153 (322)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHH---HHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             4886178999999999998633565447676889999987631862666---7888887532223567799988799999


Q ss_pred             HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEE---ECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999987985577078668989999999999997408888602---054112048741244568798999999999999
Q gi|254780485|r  188 TLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESI---PINLLIPIPGSKFEENKKVDPIEHVRIISVARI  264 (328)
Q Consensus       188 ~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v---~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL  264 (328)
T Consensus       154 i~~~Ah~lGi~ttaTml~GhiEt~eeri~HL~~lR~lQdetggf~efIp~~F~p~~~~~~~~~~~~s~~e~Lr~iAvaRl  233 (322)
T TIGR03550       154 TIEDAGRLKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARL  233 (322)
T ss_pred             HHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999985996151234204699999999999999878652965799626766899864556999899999999999999


Q ss_pred             HCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EE--EECCEEECCC-CCCHHHHHHHHHHCCCCCCCC
Q ss_conf             686872142311565165689999980998---89--9778665158-889899999999829853247
Q gi|254780485|r  265 LMPKSRLRLAAGRAMMSDELQALCFFSGAN---SI--FVGDTLLTAK-NPSYNKDTILFNRLGLIPDLS  327 (328)
Q Consensus       265 ~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~--~~g~~~~t~~-g~~~~~~~~~i~~~G~~P~~~  327 (328)
T Consensus       234 ~Ldn~-~~Iqa~-~~lg~~~~q~aL~~GanDlGG~~~~~~~~v~~~~~~~~~~el~~~i~~aG~~p~eR  300 (322)
T TIGR03550       234 ILPPD-ISIQVP-PNLNREDYRLLLDAGIDDWGGVSPVTPDHVNPEAPWPEIDELARATEEAGFTLKER  300 (322)
T ss_pred             HCCCC-CEEEEC-CCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             75999-728608-85675899999967997788877142754488899999999999999849986652