HHsearch alignment for GI: 254780485 and conserved domain: TIGR03551

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=100.00  E-value=0  Score=453.76  Aligned_cols=303  Identities=17%  Similarity=0.273  Sum_probs=255.3

Q ss_pred             CCHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             899999999739--9189999999998886289856999864530-7868342321243354777564100068579999
Q gi|254780485|r   19 WTSKEVFQIYNM--PFNDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLK   95 (328)
Q Consensus        19 ls~eea~~L~~~--~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~   95 (328)
T Consensus         1 ls~eeal~L~~~~~dl~~L~~~A~~vR~-~~~G~~Vtf~~n~~In~TNiC~~~C~fCaF~r~p~-~-~~ay~lt~eei~~   77 (343)
T TIGR03551         1 ITKEEALELFEARGNLFELFRLADELRR-DIVGDTVTYVVNRNINFTNVCYGGCGFCAFRKRKG-D-ADAYLLSLEEIAE   77 (343)
T ss_pred             CCHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCC-C-CCCCCCCHHHHHH
T ss_conf             9889999997159999999999999999-87799489965006255268747897677866899-9-8660079999999


Q ss_pred             HHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE-------------CCCCCHHHHHHHHCCCCCEE
Q ss_conf             99999964983899730368887442899999887621368832410-------------25699999998741576069
Q gi|254780485|r   96 EAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMT-------------LGMLSFEQAQILSKAGLDYY  162 (328)
Q Consensus        96 ~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~-------------~g~~~~~~~~~Lk~aG~~~~  162 (328)
T Consensus        78 ~~~~a~~~G~~Ei~~~gG~~--Pel~~~~y~e~~r~ik~~~p~~~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~  155 (343)
T TIGR03551        78 RAAEAWKAGATEVCIQGGIH--PDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSM  155 (343)
T ss_pred             HHHHHHHCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf             99999976996899825868--7888889999999998748830102278999999998659999999999997587767


Q ss_pred             E-EECCC-CHHHHHCCCCC-CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-C--CCE
Q ss_conf             7-51343-77773205888-89899999999999879855770786689899999999999974088886020-5--411
Q gi|254780485|r  163 N-HNIDT-SERFYPHVTTT-HTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIP-I--NLL  236 (328)
Q Consensus       163 ~-~~let-~~~~~~~~~~~-~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~-~--~~~  236 (328)
T Consensus       156 pg~~aEil~~~vr~~i~P~K~~~~~wl~~~~~Ah~lGi~ttatml~G~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f  235 (343)
T TIGR03551       156 PGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPF  235 (343)
T ss_pred             CCCCHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             88651321401241469698999999999999998599720223427889999999999999986201388269981365


Q ss_pred             EECCCCCCCC----CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEEECCEEECCCC--
Q ss_conf             2048741244----568798999999999999686872142311565165689999980998---8997786651588--
Q gi|254780485|r  237 IPIPGSKFEE----NKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIFVGDTLLTAKN--  307 (328)
Q Consensus       237 ~p~~gt~l~~----~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~~g~~~~t~~g--  307 (328)
T Consensus       236 ~-p~~t~l~~~~~~~~~~~~~e~l~~iAvaRl~l~~~i~~Iqa~w~~lg~~~~q~~L~~GanD~gGt~~~e~i~~~ag~~  314 (343)
T TIGR03551       236 V-HYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGGTLMEESISRAAGAS  314 (343)
T ss_pred             C-CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCC
T ss_conf             6-678804441566789857999999999999704776542226625598999999957984676666777563621579


Q ss_pred             ----CCHHHHHHHHHHCCCCCCCC
Q ss_conf             ----89899999999829853247
Q gi|254780485|r  308 ----PSYNKDTILFNRLGLIPDLS  327 (328)
Q Consensus       308 ----~~~~~~~~~i~~~G~~P~~~  327 (328)
T Consensus       315 ~~~~~~~~~l~~~i~~aG~~p~eR  338 (343)
T TIGR03551       315 HGEYLSPEELEAIIEDAGRIPKQR  338 (343)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             988899999999999859980125