HHsearch alignment for GI: 254780485 and conserved domain: cd01335
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.83 E-value=1.5e-18 Score=144.08 Aligned_cols=198 Identities=22% Similarity=0.408 Sum_probs=146.5
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH-HHHHHHHHHHCCCC
Q ss_conf 45307868342321243354777564100068579999999999649838997303688874428-99999887621368
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDL-SIIVDMIKGVKSLG 136 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~-~~~~e~i~~i~~~~ 136 (328)
T Consensus 1 i~~-srGC~~~C~fC~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~~~~~~ 76 (204)
T cd01335 1 LEL-TRGCNLNCGFCSNPASKGRG--PESPPEIEEILDIVLEAKERGVEVVILTGG-EPLLYPELAELLRRLKKELPGFE 76 (204)
T ss_pred CCC-CCCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCCHHHHHHHHCCCCCE
T ss_conf 921-63738569879987547987--566788999999999998759869997246-76666532101354553068717
Q ss_pred CCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHH
Q ss_conf 83241025699999998741576069751343-777732058-888989999999999987985577078668-989999
Q gi|254780485|r 137 LETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVT-TTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDD 213 (328)
Q Consensus 137 ~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~-~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~ee 213 (328)
T Consensus 77 i~~~t~~~~~~~~~l~~l~~~g~~~~~i~les~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~G~p~et~~~ 156 (204)
T cd01335 77 ISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEED 156 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHH
T ss_conf 99983365476999877540375422224356899999998488997599999999998679989999998279999999
Q ss_pred HHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCC-CHHHHHHHHH
Q ss_conf 9999999974088886020541120487412445687-9899999999
Q gi|254780485|r 214 RIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKV-DPIEHVRIIS 260 (328)
Q Consensus 214 ri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~-~~~e~lr~iA 260 (328)
T Consensus 157 ~~~~~~~~~~~~~-~~~~~~~~~~p~~gt~~~~~~~~~~~~~~~~~~~ 203 (204)
T cd01335 157 DLEELELLAEFRS-PDRVSLFRLLPEEGTPLELAAPVVPAEKLLRLIA 203 (204)
T ss_pred HHHHHHHHHHHCC-CCEEEEEEEECCCCCCHHHCCCCCCHHHHHHHHH
T ss_conf 9999999985189-9889898766228980333879799999999861