HHsearch alignment for GI: 254780485 and conserved domain: pfam04055

>pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Probab=99.57  E-value=1.5e-13  Score=110.46  Aligned_cols=158  Identities=25%  Similarity=0.362  Sum_probs=112.3

Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH-HHHHHHHHHHC--CC
Q ss_conf             5307868342321243354777564100068579999999999649838997303688874428-99999887621--36
Q gi|254780485|r   59 NIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDL-SIIVDMIKGVK--SL  135 (328)
Q Consensus        59 n~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~-~~~~e~i~~i~--~~  135 (328)
T Consensus         2 ~~-~~gC~~~C~fC~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~-gg~p~~~~~~~~~~~~~~~~~~~~~~   77 (165)
T pfam04055         2 II-TPGCNLRCTYCAFPSIR--ARGKGRELSPEEILEEAKELARLGVEVVILT-GGEPLLLPDLVELLERLLKLEELEGI   77 (165)
T ss_pred             EE-CCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf             88-93748779689997857--8886522699999999988874598599993-16766652777778887653146764


Q ss_pred             CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCC-HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHH
Q ss_conf             8832410256999999987415760697513437-77732058888989999999999987985577078668-989999
Q gi|254780485|r  136 GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS-ERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDD  213 (328)
Q Consensus       136 ~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~-~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~ee  213 (328)
T Consensus        78 ~~~~~t~~~~~~~~~~~~l~~~g~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~i~~~~~~gi~~~~~~i~~~~~e~~~~  157 (165)
T pfam04055        78 RITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLKIINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGENDED  157 (165)
T ss_pred             EEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHH
T ss_conf             89999851433104568999719852224635599999998579999899999999999879978899999799999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780485|r  214 RIDMLLT  220 (328)
Q Consensus       214 ri~~l~~  220 (328)
T Consensus       158 ~~~~~~~  164 (165)
T pfam04055       158 LEETLEL  164 (165)
T ss_pred             HHHHHHH
T ss_conf             9999603