HHsearch alignment for GI: 254780485 and conserved domain: pfam05913
>pfam05913 DUF871 Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.
Probab=92.10 E-value=0.98 Score=24.61 Aligned_cols=118 Identities=26% Similarity=0.298 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCHHHHHHHHHHHCCCCCCEEEECCC-------CCHHHHHHHHCCCCC
Q ss_conf 8579999999999649838997303688-87442899999887621368832410256-------999999987415760
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWRE-PKERDLSIIVDMIKGVKSLGLETCMTLGM-------LSFEQAQILSKAGLD 160 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~-~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-------~~~~~~~~Lk~aG~~ 160 (328)
T Consensus 11 ~~e~~~~yi~~a~~~Gf~~iFTSL~i~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~lg~s~~dl~~~~~lGi~ 90 (357)
T pfam05913 11 TFEEDKAYIKLAAKLGFTRIFTSLHIPEDDKEEYLERLKELIKYAKELGMEVIADISPSVLKQLGISYDDLSFLKELGVT 90 (357)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 87999999999998699899604775788879999999999999998799999987989998819997889999977998
Q ss_pred EEEEEC---------------------CC---------------------CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 697513---------------------43---------------------777732058888989999999999987985
Q gi|254780485|r 161 YYNHNI---------------------DT---------------------SERFYPHVTTTHTFEDRLQTLENVRKSGIK 198 (328)
Q Consensus 161 ~~~~~l---------------------et---------------------~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~ 198 (328)
T Consensus 91 glRlD~Gf~~~eia~ls~n~l~I~LNASti~~~~l~~l~~~~~n~~~l~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~ 170 (357)
T pfam05913 91 GLRLDYGFTGEEIAELSKNPLKIELNASTITTEYLDNLLSYGANFENLEACHNFYPRPYTGLSYEFFLEKNRWFKKYGIK 170 (357)
T ss_pred EEEECCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99977999989999972799679997864999999999980998789799744479988788999999999999977996
Q ss_pred CCCEEEECC
Q ss_conf 577078668
Q gi|254780485|r 199 VCCGGILGL 207 (328)
Q Consensus 199 ~~sg~l~G~ 207 (328)
T Consensus 171 ~~-AFI~g~ 178 (357)
T pfam05913 171 TA-AFIPGD 178 (357)
T ss_pred EE-EEEECC
T ss_conf 89-997279