HHsearch alignment for GI: 254780485 and conserved domain: pfam10113
>pfam10113 Fibrillarin_2 Fibrillarin-like archaeal protein. Members of this family of proteins include archaeal fibrillarin homologs.
Probab=97.02 E-value=0.0084 Score=38.45 Aligned_cols=105 Identities=23% Similarity=0.347 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 89899999999999879855770786689899999999999974088886020541120487412445687989999999
Q gi|254780485|r 180 HTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRII 259 (328)
Q Consensus 180 ~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~i 259 (328)
T Consensus 203 Apl~Eme~Va~~A~k~gkGvEa--I~hiGDGyDdLI~G~~a~~dl~vDv-------fV-vEGgPFNrakd-rl~aFakaV 271 (505)
T pfam10113 203 APLDEMKEVAETARKYGKGVEA--IFHVGDGYDDLITGLKAALDLDVDV-------FV-VEGGPFNRAKD-RLKAFARAV 271 (505)
T ss_pred CCHHHHHHHHHHHHHHCCCCEE--EEEECCCHHHHHHHHHHHHHCCCCE-------EE-EECCCCCCCCC-HHHHHHHHH
T ss_conf 8879999999999984878348--9971477488999999876158758-------99-80787654433-689999888
Q ss_pred HHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEEC
Q ss_conf 9999968687214231156516568999998099889977
Q gi|254780485|r 260 SVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVG 299 (328)
Q Consensus 260 Ai~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g 299 (328)
T Consensus 272 a~sRIL~~G~VVaTNGAYE----dEcRiGLRsGLN~iitG 307 (505)
T pfam10113 272 AASRILVPGKVVATNGAYE----DECRVGLRAGLNAILTG 307 (505)
T ss_pred HHHHEECCCCEEECCCCHH----HHHHHHHHHCCCEEECC
T ss_conf 8751000684873276107----77888776144311116