RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780485|ref|YP_003064898.1| biotin synthase [Candidatus Liberibacter asiaticus str. psy62] (328 letters) >gnl|CDD|185063 PRK15108, PRK15108, biotin synthase; Provisional. Length = 345 Score = 420 bits (1082), Expect = e-118 Identities = 167/306 (54%), Positives = 226/306 (73%) Query: 19 WTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN 78 WT +V +++ P +LLF + VHR++F+P +Q+S LL+IKTG CPE+C YC QS Sbjct: 7 WTLSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRY 66 Query: 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE 138 K+ L+A +L+ V+QVL+ A+ AK G+TR+CMGAAW+ P ERD+ + M++GVK++GLE Sbjct: 67 KTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLE 126 Query: 139 TCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIK 198 TCMTLG LS QAQ L+ AGLDYYNHN+DTS FY ++ TT T+++RL TLE VR +GIK Sbjct: 127 TCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIK 186 Query: 199 VCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRI 258 VC GGI+GLGE + DR +LL LANL TPPES+PIN+L+ + G+ +N VD + +R Sbjct: 187 VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRT 246 Query: 259 ISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFN 318 I+VARI+MP S +RL+AGR M+++ QA+CF +GANSIF G LLT NP +KD LF Sbjct: 247 IAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFR 306 Query: 319 RLGLIP 324 +LGL P Sbjct: 307 KLGLNP 312 >gnl|CDD|178013 PLN02389, PLN02389, biotin synthase. Length = 379 Score = 399 bits (1026), Expect = e-112 Identities = 156/308 (50%), Positives = 213/308 (69%), Gaps = 2/308 (0%) Query: 19 WTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN 78 WT E+ ++Y+ P DLLF VHR +P +Q LL+IKTGGC E+C YC QS Sbjct: 47 WTRDEIKEVYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRY 106 Query: 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP--KERDLSIIVDMIKGVKSLG 136 + +KA KL++ D VL+ AK AKE G+TR+CMGAAWR+ ++ + + I++ +K ++ +G Sbjct: 107 DTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMG 166 Query: 137 LETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSG 196 +E C TLGML EQA L +AGL YNHN+DTS +YP+V TT +++DRL+TLE VR++G Sbjct: 167 MEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAG 226 Query: 197 IKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHV 256 I VC GGI+GLGE +DR+ +L TLA L PES+PIN L+ + G+ E+ K V+ E V Sbjct: 227 ISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMV 286 Query: 257 RIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTIL 316 R+I+ ARI+MPK+ +RL+AGR S QALCF +GANSIF GD LLT N ++ D + Sbjct: 287 RMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAM 346 Query: 317 FNRLGLIP 324 F LGLIP Sbjct: 347 FKELGLIP 354 >gnl|CDD|161876 TIGR00433, bioB, biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway. Length = 296 Score = 389 bits (1000), Expect = e-109 Identities = 151/298 (50%), Positives = 216/298 (72%), Gaps = 4/298 (1%) Query: 27 IYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASK 86 ++ P DLL+ + +HRK+F+P +QL ++NIK+GGCPE+C YC+QS +K+ L + Sbjct: 1 LFETPLLDLLYEAFQIHRKHFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIER 60 Query: 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVD-MIKGVKSLGLETCMTLGM 145 L VD+VL+EA+ AK GATR+C+ A+ R PK+R+ V+ M++ V+ +GL+TC TLG+ Sbjct: 61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGL 120 Query: 146 LSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGIL 205 L EQA+ L AGLDYYNHN+DTS+ FY ++ +THT++DR+ TLEN +K+G+KVC GGI Sbjct: 121 LDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIF 180 Query: 206 GLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARIL 265 GLGE ++DRI + L LANL PPES+PIN L+ I G+ +NK++ + ++ I++ARI+ Sbjct: 181 GLGETVEDRIGLALALANL--PPESVPINFLVKIKGTPLADNKELSADDALKTIALARII 238 Query: 266 MPKSRLRLAAGR-AMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGL 322 MPK+ +RLA GR M + QA+CF +GANSIFVGD L T NP +KD L +LGL Sbjct: 239 MPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTTGNPEEDKDKKLLAKLGL 296 >gnl|CDD|180492 PRK06256, PRK06256, biotin synthase; Validated. Length = 336 Score = 304 bits (781), Expect = 2e-83 Identities = 117/314 (37%), Positives = 194/314 (61%), Gaps = 11/314 (3%) Query: 20 TSKEVFQIYNMP---FNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSV 76 T +E + +P +LL ++ V RK+F ++L+ ++N K+G CPE+CGYC+QS Sbjct: 21 TKEEALALLEIPDDDLLELLAAAYEV-RKHFCGKKVKLNTIINAKSGLCPEDCGYCSQSA 79 Query: 77 HNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-L 135 + + + ++++++++ AK A E GA +C+ A+ R P +++ +V+ +K +K Sbjct: 80 GSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEET 139 Query: 136 GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS 195 LE C LG+L+ EQA+ L +AG+D YNHN++TS ++P+V TTHT+EDR+ T E V+ + Sbjct: 140 DLEICACLGLLTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAA 199 Query: 196 GIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEH 255 GI+ C GGI+G+GE ++DR++ L L +SIPIN L PIPG+ E + ++ P+E Sbjct: 200 GIEPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIPGTPLENHPELTPLEC 257 Query: 256 VRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSY-NKDT 314 ++ I++ R++ P +R+A GR + LQ L GANS+ VG+ L T P+ + D Sbjct: 258 LKTIAIFRLINPDKEIRIAGGREVNLRSLQPL-GLGGANSVIVGNYLTTVGQPATADLDM 316 Query: 315 ILFNRLGLIPDLSA 328 I LG +L A Sbjct: 317 I--EDLGFEIELDA 328 >gnl|CDD|181453 PRK08508, PRK08508, biotin synthase; Provisional. Length = 279 Score = 220 bits (562), Expect = 4e-58 Identities = 109/275 (39%), Positives = 159/275 (57%), Gaps = 6/275 (2%) Query: 50 NHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYC 109 I L + NI +G C E+C YC QS H K+ +K K +++Q+++EAK AK NGA +C Sbjct: 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFC 61 Query: 110 MGAAWREPKERDLSIIVDMIKGVKS--LGLETCMTLGMLSFEQAQILSKAGLDYYNHNID 167 + + R ++ L + + K VK GL G S EQ + L KAG+ YNHN++ Sbjct: 62 LVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLE 121 Query: 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTP 227 TS+ F+P + TTHT+E+R QT EN +++G+ +C GGI GLGE +DRI L +LA+LS Sbjct: 122 TSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLS-- 179 Query: 228 PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQAL 287 P S PIN IP P + + E + I+ +A+ +P +RL +A GR ++ E Q Sbjct: 180 PHSTPINFFIPNPALPLKAP-TLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYE 238 Query: 288 CFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGL 322 F +GAN+I +GD LT K + KD LG Sbjct: 239 IFEAGANAIVIGD-YLTTKGEAPKKDIEKLKSLGF 272 >gnl|CDD|128968 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 Score = 127 bits (320), Expect = 4e-30 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 17/219 (7%) Query: 55 SKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNA--KENGATRYCMGA 112 L I T GCP C +C+ + KL++ L + + ++ KE +G Sbjct: 1 PLALYIITRGCPRRCTFCSFPSA-RGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGG 59 Query: 113 AW-----REPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNID 167 E E L I +++ + + G L+ E + L +AG++ + + Sbjct: 60 GTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQ 119 Query: 168 T-SERFYPHVTTTHTFEDRLQTLENVRKSG-IKVCCGGILGL-GEMIDDRIDMLLTLANL 224 + S+ + HT ED L+ +E +R++G IKV I+GL GE +D + L L L Sbjct: 120 SGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKEL 179 Query: 225 STPPESIPINLLIPIPGSKFEENKK----VDPIEHVRII 259 P+ + I L P PG+ + K D E + ++ Sbjct: 180 --GPDRVSIFPLSPRPGTPLAKLYKRLKPPDKEERLELL 216 >gnl|CDD|129109 smart00876, BATS, Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation. Length = 94 Score = 121 bits (305), Expect = 3e-28 Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 1/94 (1%) Query: 232 PINLLIPIPGSKFEENKK-VDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFF 290 PIN L PI G+ E+ V P E +R I+ AR+ +P + +RL+ GR + +LQALCF Sbjct: 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFS 60 Query: 291 SGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIP 324 +GANSIF GD LT P D + +LGL P Sbjct: 61 AGANSIFGGDKYLTTSGPRSADDVAMLEKLGLEP 94 >gnl|CDD|148534 pfam06968, BATS, Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), EC:2.8.1.6, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this family) and form a heterodimer. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers. This domain therefore may be involved in co-factor binding or dimerization (Finn, RD personal observation). Length = 93 Score = 113 bits (286), Expect = 5e-26 Identities = 38/93 (40%), Positives = 55/93 (59%) Query: 232 PINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFS 291 PIN L PI G+ E+ + E ++ I+ R+L+P + +RL+ GR + +LQ L F S Sbjct: 1 PINFLRPIEGTPLEDQPPLSDEEALKTIAAFRLLLPDAGIRLSGGREALLRDLQGLAFMS 60 Query: 292 GANSIFVGDTLLTAKNPSYNKDTILFNRLGLIP 324 GANS FVG L T+ N S ++D + LGL P Sbjct: 61 GANSTFVGGYLTTSGNRSPDEDIAMLKDLGLEP 93 >gnl|CDD|180835 PRK07094, PRK07094, biotin synthase; Provisional. Length = 323 Score = 54.5 bits (132), Expect = 4e-08 Identities = 56/213 (26%), Positives = 107/213 (50%), Gaps = 21/213 (9%) Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCM--GAAWREPKERDL 122 C NC YC NK+ ++ +L + +++L+ AK A E G + G E+ Sbjct: 49 CRNNCLYCGLRRDNKN-IERYRL-SPEEILECAKKAYELGYRTIVLQSGEDPYYTDEK-- 104 Query: 123 SIIVDMIKGVKS-LGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS-----ERFYPHV 176 I D+IK +K L + ++LG S+E+ + +AG D Y +T+ + +P Sbjct: 105 --IADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPG- 161 Query: 177 TTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINL 235 +FE+R+ L+++++ G +V G ++GL G+ ++D D +L L L + I I Sbjct: 162 ---MSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD--LDMIGIGP 216 Query: 236 LIPIPGSKFEENKKVDPIEHVRIISVARILMPK 268 IP P + ++ K ++++++ R+L+P Sbjct: 217 FIPHPDTPLKDEKGGSLELTLKVLALLRLLLPD 249 >gnl|CDD|161907 TIGR00510, lipA, lipoate synthase. The family shows strong sequence conservation. Length = 302 Score = 48.3 bits (115), Expect = 3e-06 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 153 ILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS--GIKVCCGGILGLGEM 210 IL A D YNHN++T ER P V T+ L+ LE ++ + G ++GLGE Sbjct: 161 ILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGET 220 Query: 211 IDDRIDMLLTLAN 223 ++ L L + Sbjct: 221 NEEIKQTLKDLRD 233 >gnl|CDD|130279 TIGR01212, TIGR01212, radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. Length = 302 Score = 43.6 bits (103), Expect = 7e-05 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query: 180 HTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLS-TPPESIPINLLI 237 H F + ++ RK GIKVC ILGL GE DR +M+ T +S + I I+ L Sbjct: 160 HDFACYVDAVKRARKRGIKVCSHVILGLPGE---DREEMMETAKIVSLLDVDGIKIHPLH 216 Query: 238 PIPGSKFEE 246 + G+K + Sbjct: 217 VVKGTKMAK 225 >gnl|CDD|132589 TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. Length = 322 Score = 43.4 bits (103), Expect = 8e-05 Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 40/233 (17%) Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGAT------------RYCMGA 112 C CGYC +L+A+ L++ ++VL+ + G T RY Sbjct: 14 CRNRCGYCT-FRRPPGELEAA-LLSPEEVLEILRKGAAAGCTEALFTFGEKPEERY--PE 69 Query: 113 AWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDY---YNHNI--- 166 A E ++ ++ + L LE G+L ++S+ L N ++ Sbjct: 70 AREWLAEMGYDSTLEYLRELCELALEET---GLLPHTNPGVMSRDELARLKPVNASMGLM 126 Query: 167 --DTSERFYPHVTTTHTF------EDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDML 218 TSER H RL+T+E+ + I G ++G+GE ++R + L Sbjct: 127 LETTSERLCK--GEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILIGIGETREERAESL 184 Query: 219 LTLANLSTP----PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMP 267 L + L E I N PG+ E + + E +R ++VAR+++P Sbjct: 185 LAIRELHERYGHIQEVIVQNFR-AKPGTPMENHPEPSLEEMLRTVAVARLILP 236 >gnl|CDD|183830 PRK12928, PRK12928, lipoyl synthase; Provisional. Length = 290 Score = 43.4 bits (103), Expect = 8e-05 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 149 EQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRK--SGIKVCCGGILG 206 E+ + A D +NHN++T R V ++ L L ++ I G +LG Sbjct: 154 ERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLG 213 Query: 207 LGEMIDDRIDMLLTL 221 LGE D+ I+ L L Sbjct: 214 LGETEDEVIETLRDL 228 >gnl|CDD|181720 PRK09240, thiH, thiamine biosynthesis protein ThiH; Reviewed. Length = 371 Score = 43.3 bits (103), Expect = 1e-04 Identities = 56/236 (23%), Positives = 88/236 (37%), Gaps = 62/236 (26%) Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWRE-------- 116 C +C YC S+ NK K K L + +++ +E K+ G + Sbjct: 84 CANDCTYCGFSMSNKIKRK--TL-DEEEIEREMAAIKKLG---------FEHILLLTGEH 131 Query: 117 PKERDLSIIVDMIKGVK----SLGLETCMTLGMLSFEQAQILSKAGLDY-------YNHN 165 + + I + + S+ +E L S E+ L + GLD YN Sbjct: 132 EAKVGVDYIRRALPIAREYFSSVSIEV-QPL---SEEEYAELVELGLDGVTVYQETYN-- 185 Query: 166 IDTSERFYPHVTTTHT------FEDRLQTLENVRKSGI-KVCCGGILGLGEMIDDRIDML 218 Y H FE RL+T E ++GI K+ G +LGL D R D L Sbjct: 186 ----PATYAKH---HLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLS---DWRTDAL 235 Query: 219 LTLANLS----TPPES-IPINL--LIPIPGSKFEENKKVDPIEHVRIISVARILMP 267 +T +L ++ I+ L P G E V + V++I R+ +P Sbjct: 236 MTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAFRLFLP 290 >gnl|CDD|180485 PRK06245, cofG, FO synthase subunit 1; Reviewed. Length = 336 Score = 43.0 bits (102), Expect = 1e-04 Identities = 57/237 (24%), Positives = 93/237 (39%), Gaps = 48/237 (20%) Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGAT------------RYCMGA 112 C CGYC L++ ++V + + + G T Y Sbjct: 22 CRNRCGYCTFRRDPGQ----PSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESY--ER 75 Query: 113 AWREPKERDLSIIVDMIKGVKSLGLETCMTL------GMLSFEQAQILSKA----GLDYY 162 + E S I++ + + L LE L G+L+ E+ + L + GL Sbjct: 76 IKEQLAEMGYSSILEYLYDLCELALE--EGLLPHTNAGILTREEMEKLKEVNASMGLMLE 133 Query: 163 NHNIDTSERFYPHVTTTH------TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRID 216 TS R + T H E RL+T+EN K I G ++G+GE +DR + Sbjct: 134 Q----TSPRL---LNTVHRGSPGKDPELRLETIENAGKLKIPFTTGILIGIGETWEDRAE 186 Query: 217 MLLTLANLSTP----PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKS 269 L +A L E I I P PG E + + E +R++++AR+++P Sbjct: 187 SLEAIAELHERYGHIQEVI-IQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPPD 242 >gnl|CDD|131404 TIGR02351, thiH, thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. Length = 366 Score = 42.3 bits (100), Expect = 2e-04 Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 48/254 (18%) Query: 39 SHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAK 98 + + RK F N I L L + + C C YC S+ NK K K +N +++ +E + Sbjct: 59 AKKLTRKRFG-NTISLFTPLYL-SNYCSNKCVYCGFSMSNKIK---RKKLNEEEIEREIE 113 Query: 99 NAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK----SLGLETCMTLGMLSFEQAQIL 154 K++G + K + I + IK + SL +E + L+ E+ + L Sbjct: 114 AIKKSGFKEILL-VTGESEKAAGVEYIAEAIKLAREYFSSLAIE----VQPLNEEEYKKL 168 Query: 155 SKAGLDY-------YNHNIDTSERFYPHVTTTHT------FEDRLQTLENVRKSGI-KVC 200 +AGLD YN E+ Y H F RL T E K+G+ K+ Sbjct: 169 VEAGLDGVTVYQETYN------EKKYKKH---HLAGKKKDFRYRLNTPERAAKAGMRKIG 219 Query: 201 CGGILGLGEMIDDRIDMLLTLANL-----STPPESIPINL--LIPIPGSKFEENKKVDPI 253 G +LGL + R D T +L I I++ L P + V Sbjct: 220 IGALLGLDDW---RTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNG-LKPKVIVTDR 275 Query: 254 EHVRIISVARILMP 267 E V+II R+ P Sbjct: 276 ELVQIICAYRLFDP 289 >gnl|CDD|180115 PRK05481, PRK05481, lipoyl synthase; Provisional. Length = 289 Score = 40.8 bits (97), Expect = 5e-04 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 14/69 (20%) Query: 149 EQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVR--------KSGIKVC 200 + + A D +NHN++T R Y V +E L+ L+ + KSG+ Sbjct: 146 DALLTVLDARPDVFNHNLETVPRLYKRVRPGADYERSLELLKRAKELHPGIPTKSGL--- 202 Query: 201 CGGILGLGE 209 ++GLGE Sbjct: 203 ---MVGLGE 208 >gnl|CDD|173603 PTZ00413, PTZ00413, lipoate synthase; Provisional. Length = 398 Score = 37.1 bits (86), Expect = 0.007 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 16/66 (24%) Query: 154 LSKAGLDYYNHNIDTSERFYPHVTTTH-TFEDRLQTLENVR---------KSGIKVCCGG 203 L+ + L Y HNI+ ER P+V ++ L+ LE+V+ KS I Sbjct: 248 LANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSI------ 301 Query: 204 ILGLGE 209 +LGLGE Sbjct: 302 MLGLGE 307 >gnl|CDD|132590 TIGR03551, F420_cofH, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. Length = 343 Score = 35.7 bits (83), Expect = 0.015 Identities = 59/292 (20%), Positives = 97/292 (33%), Gaps = 77/292 (26%) Query: 59 NIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP 117 NI T C CG+C + L++++++ + A A + GAT C+ Sbjct: 42 NINFTNVCYGGCGFCAFRKRKGDA--DAYLLSLEEIAERAAEAWKAGATEVCIQGGIH-- 97 Query: 118 KERDLSIIVDMIKGVKSLGLETCM-------------TLGMLSFEQAQILSKAGLDYYNH 164 + D +D+++ VK + G+ E + L +AGLD Sbjct: 98 PDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLD---- 153 Query: 165 NIDTSERFYPHVTTTHTF-------------EDRLQTLENVR------KSGIKVCCGGIL 205 + T D+L T E + K GI + Sbjct: 154 ------------SMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY 201 Query: 206 GLGEMIDDRIDMLLTLAN-------------LSTPPESIPINLLIPI-PGSKFEENKKVD 251 G E + +D LL L L + P+ L PG E+ KV Sbjct: 202 GHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKV- 260 Query: 252 PIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303 ++ARIL+ + A + +L + GAN + G TL+ Sbjct: 261 -------HAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDL--GGTLM 303 >gnl|CDD|129517 TIGR00423, TIGR00423, radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. Length = 309 Score = 35.1 bits (81), Expect = 0.024 Identities = 53/277 (19%), Positives = 102/277 (36%), Gaps = 62/277 (22%) Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCM--------GAAWRE 116 C C +C + + K K + +++++++L++ K A GAT C+ + E Sbjct: 15 CVGKCKFC--AFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYE 72 Query: 117 P-----KERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQA-QILSKAGLDYY-------- 162 K+ + I + + LS E+ + L KAGLD Sbjct: 73 ELFRAIKQEFPDV---HIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEIL 129 Query: 163 ---------NHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDD 213 + + + E T H + GI + G E + Sbjct: 130 DDSVRRKICPNKLSSDEWLEVI-KTAH-------------RLGIPTTATMMFGHVENPEH 175 Query: 214 RIDMLLTLANLSTPPESIPINLLIPI-------PGSKFEENKKVDPIEHVRIISVARILM 266 R++ LL + + ++ IP+ P + E K I+ +++I+++RIL+ Sbjct: 176 RVEHLLRIRKIQE--KTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILL 233 Query: 267 PKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303 R + A + +L + GAN + G TL+ Sbjct: 234 NNIR-NIQASWVKLGLKLAQVALEFGANDL--GGTLM 267 >gnl|CDD|132511 TIGR03471, HpnJ, hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. Length = 472 Score = 34.3 bits (79), Expect = 0.045 Identities = 55/256 (21%), Positives = 92/256 (35%), Gaps = 76/256 (29%) Query: 27 IYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLN----IKTG-GCPENCGYC--NQSVHNK 79 I +M D L + V++++ + + L + + TG GCP C +C Q+V Sbjct: 166 IEDM---DALPFVAPVYKRDLDIERYFIGYLKHPYISLYTGRGCPSKCTFCLWPQTVGGH 222 Query: 80 SKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKE---------RDLSIIVDMIK 130 S + V++E K A EN + E +E D ++ + Sbjct: 223 RYRTRS----AESVIEEVKYALEN----------FPEVREFFFDDDTFTDDKPRAEEIAR 268 Query: 131 GVKSLGLE-TCMTLGMLSFEQAQILSKAGL-----------DYYNHNI------DTSERF 172 + LG+ +C + +E +++ + GL NI + + RF Sbjct: 269 KLGPLGVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRF 328 Query: 173 YPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL----GEMIDDRIDMLLTLANLSTPP 228 + K GIKV ILGL E I ID L P Sbjct: 329 ----------------TRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELN-----P 367 Query: 229 ESIPINLLIPIPGSKF 244 +I ++L P PG++ Sbjct: 368 HTIQVSLAAPYPGTEL 383 >gnl|CDD|180943 PRK07360, PRK07360, FO synthase subunit 2; Reviewed. Length = 371 Score = 33.3 bits (77), Expect = 0.091 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Query: 58 LNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCM 110 NI T C +CG+C ++ A L + ++L++A A + GAT C+ Sbjct: 62 RNINFTNICEGHCGFCAFRR-DEGDHGAFWL-TIAEILEKAAEAVKRGATEVCI 113 >gnl|CDD|178048 PLN02428, PLN02428, lipoic acid synthase. Length = 349 Score = 33.2 bits (76), Expect = 0.094 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 13/78 (16%) Query: 152 QILSKAGLDYYNHNIDTSERFYPHVTTTH-TFEDRLQTLENVRKSGIKVCCGG------- 203 + ++ +GLD + HNI+T ER V ++ L L++ K G Sbjct: 199 ETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHA-----KESKPGLLTKTSI 253 Query: 204 ILGLGEMIDDRIDMLLTL 221 +LGLGE ++ + + L Sbjct: 254 MLGLGETDEEVVQTMEDL 271 >gnl|CDD|180499 PRK06267, PRK06267, hypothetical protein; Provisional. Length = 350 Score = 32.0 bits (73), Expect = 0.21 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 16/80 (20%) Query: 194 KSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLI-----PIPGSKFEENK 248 K+GI + ILGLGE DD I+ LL L E + ++ + P G+ FE Sbjct: 168 KTGITI----ILGLGETEDD-IEKLLNLI------EELDLDRITFYSLNPQKGTIFENKP 216 Query: 249 KVDPIEHVRIISVARILMPK 268 V +E++ +S R+ PK Sbjct: 217 SVTTLEYMNWVSSVRLNFPK 236 >gnl|CDD|131546 TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. Length = 235 Score = 31.6 bits (72), Expect = 0.26 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 16/86 (18%) Query: 63 GGCPENCGYCNQSVHNKS--KLKASKLINVDQVLKEAKNAKE-----NGATRYCMGAAWR 115 GCP C YC HN LK + ++++KE + K+ G + G Sbjct: 23 QGCPLRCQYC----HNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLL 78 Query: 116 EPKERDLSIIVDMIKGVKSLGLETCM 141 +P+ + ++ K K LG+ TC+ Sbjct: 79 QPE-----FLSELFKACKELGIHTCL 99 >gnl|CDD|185129 PRK15207, PRK15207, long polar fimbrial outer membrane usher protein LpfC; Provisional. Length = 842 Score = 31.0 bits (70), Expect = 0.47 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 20/115 (17%) Query: 214 RIDMLLTLANLSTPPESIPINLLIPIPGSKFE--ENKKVDPIEHVRIISVARILMPKSRL 271 R+D L ++ P + + +IP S F+ ++ AR +P+SR Sbjct: 115 RVDSFPAL-KMAPPEACVAFDEIIPQATSHFDFNTQTLHLSFPQAAMMQTARGTVPESR- 172 Query: 272 RLAAGRAMMSDELQALCF---FSGANSIFVGDTLLTAKNPSYNKDTILFN-RLGL 322 + + AL FSG+N + G T + SY D+ N R GL Sbjct: 173 --------WDEGIPALLLDYSFSGSNGSYDG----TGSSSSYTSDSYYLNLRSGL 215 >gnl|CDD|181715 PRK09234, fbiC, FO synthase; Reviewed. Length = 843 Score = 30.7 bits (70), Expect = 0.47 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 6/92 (6%) Query: 185 RLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTP----PESIPINLLIPIP 240 RL+ LE+ + + G ++G+GE + +R + L + L E I N P Sbjct: 220 RLRVLEDAGRLSVPFTTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFR-AKP 278 Query: 241 GSKFEENKKVDPIEHVRIISVARILM-PKSRL 271 + E + I+VAR+++ PK R+ Sbjct: 279 DTAMAGVPDAGLEELLATIAVARLVLGPKMRI 310 >gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256 Score = 30.2 bits (68), Expect = 0.66 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Query: 291 SGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIPD 325 +GAN D +L A++ + F ++GLIPD Sbjct: 107 AGANLALACDIVLAAESARF---IQAFAKIGLIPD 138 >gnl|CDD|162967 TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). Length = 302 Score = 29.2 bits (66), Expect = 1.7 Identities = 31/139 (22%), Positives = 67/139 (48%), Gaps = 10/139 (7%) Query: 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERD 121 T C +C YC+ ++S ++ +++ + + A E G + + EP R Sbjct: 17 TDRCNLSCFYCHMEGEDRS---GGNELSPEEIERIVRVASEFGVRKVKITGG--EPLLRK 71 Query: 122 LSIIVDMIKGVKSLGLE--TCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT 178 ++++I+ +K G++ + T G+L + A+ L +AGLD N ++DT Y +T Sbjct: 72 --DLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITG 129 Query: 179 THTFEDRLQTLENVRKSGI 197 + ++ +E+ +G+ Sbjct: 130 RGALDRVIEGIESAVDAGL 148 >gnl|CDD|179671 PRK03906, PRK03906, mannonate dehydratase; Provisional. Length = 385 Score = 28.3 bits (64), Expect = 3.1 Identities = 9/15 (60%), Positives = 11/15 (73%) Query: 187 QTLENVRKSGIKVCC 201 QTL N+ +GIKV C Sbjct: 87 QTLRNLAAAGIKVVC 101 >gnl|CDD|184248 PRK13692, PRK13692, (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional. Length = 159 Score = 28.2 bits (63), Expect = 3.2 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%) Query: 70 GYCNQSV---HNKSKLKASKLINVDQVLKEAKNAKENGATRYC 109 GY QS H + ++++ VDQVLK K G YC Sbjct: 64 GYKAQSAFFKHANIAVADAQIVQVDQVLKFEKPIVA-GDKLYC 105 >gnl|CDD|162966 TIGR02666, moaA, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. Length = 334 Score = 28.0 bits (63), Expect = 3.8 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 11/110 (10%) Query: 69 CGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGAT--RYCMGAAWREPKER-DLSII 125 C YC L +L+ +++ + + G R G EP R DL + Sbjct: 24 CVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGG----EPLLRKDLVEL 79 Query: 126 VDMIKGVKSLGLETCMTL-GMLSFEQAQILSKAGLDYYNHNIDT--SERF 172 V + + + + +T G+L A+ L +AGL N ++D+ ERF Sbjct: 80 VARLAALPGIE-DIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERF 128 >gnl|CDD|179594 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional. Length = 621 Score = 27.3 bits (61), Expect = 5.1 Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%) Query: 141 MTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTT 179 + L L + +A + HN+ E PH T Sbjct: 529 LVLESLGLGPYEARERADR-FRRHNLQMVEEMAPHENDT 566 >gnl|CDD|181250 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional. Length = 262 Score = 27.2 bits (61), Expect = 6.6 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Query: 292 GANSIFVGDTLLTAKNPSYNKDTILFNRLGLIPD 325 GAN D +L A++ S+ + F ++GL+PD Sbjct: 114 GANLALACDIVLAARSASFIQA---FVKIGLVPD 144 >gnl|CDD|180546 PRK06370, PRK06370, mercuric reductase; Validated. Length = 463 Score = 27.1 bits (61), Expect = 7.1 Identities = 7/18 (38%), Positives = 9/18 (50%) Query: 290 FSGANSIFVGDTLLTAKN 307 F N++ VG L AK Sbjct: 119 FESPNTVRVGGETLRAKR 136 >gnl|CDD|180644 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau; Validated. Length = 563 Score = 26.7 bits (59), Expect = 7.8 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Query: 54 LSKLLNIKTGGCPENCGYCN--QSVHNKSKL 82 ++ LN G P CG C+ +S+ N + L Sbjct: 58 FARCLNCVNGPTPMPCGECSSCKSIDNDNSL 88 >gnl|CDD|183248 PRK11636, mrcA, penicillin-binding protein 1a; Provisional. Length = 850 Score = 26.6 bits (59), Expect = 7.9 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Query: 219 LTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVA 262 LTL + PPE + I S+F E+ VDP+ R SVA Sbjct: 69 LTLDQI--PPEMV--KAFIATEDSRFYEHHGVDPVGIFRAASVA 108 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.135 0.400 Gapped Lambda K H 0.267 0.0747 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,265,075 Number of extensions: 326567 Number of successful extensions: 645 Number of sequences better than 10.0: 1 Number of HSP's gapped: 624 Number of HSP's successfully gapped: 42 Length of query: 328 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 234 Effective length of database: 3,963,321 Effective search space: 927417114 Effective search space used: 927417114 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (25.7 bits)