HHsearch alignment for GI: 254780486 and conserved domain: COG0403

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism].
Probab=98.72  E-value=2e-05  Score=53.91  Aligned_cols=319  Identities=14%  Similarity=0.167  Sum_probs=162.2

Q ss_pred             CCEEEECCCCCCCCCCCCHHHHH-HHHHHHHHHCCCC--CCCCCCCCCCCHHHHHHHHHHHHHCCCC--CEEEECCCCHH
Q ss_conf             97689803446566779889999-9999998637868--8722443688589999999984012888--51674166024
Q gi|254780486|r   28 RQDIWDFTSHDYLALSSSTLLRE-KILSSLDSKIPIG--SGGSRLLCGNYNQHLELEEEAADFFGFE--KMLYFGSGYAA  102 (381)
Q Consensus        28 ~~~~l~f~s~dYLGl~~~p~v~~-a~~~a~~~~~g~~--~~~sr~~~G~~~~~~~lE~~lA~~~g~e--~al~~~sG~~A  102 (381)
T Consensus        73 N~~~~sfiG~GyY~~-~~P~vI~rnile~pe--wyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAa  149 (450)
T COG0403          73 NKVFTSFIGAGYYDT-YTPPVILRNILENPE--WYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAA  149 (450)
T ss_pred             CCHHHHHCCCCCCCC-CCCHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             661454256864687-182788887643854--22367888636665799999989999999858874450023167699


Q ss_pred             HHHHHHHH--CC-CCCCCCHHHHCCHHHHHHHH----HCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf             56556663--16-89710045420267752666----4087640305688147899764310002478607971462157
Q gi|254780486|r  103 NMAILSTL--PQ-ATDLIVYDKLVHASIREGIN----SGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSM  175 (381)
Q Consensus       103 n~~~i~~l--~~-~~d~ii~D~~~HaSi~~g~~----ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm  175 (381)
T Consensus       150 AEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~-~~~------~~~gv~vQyP~-~  221 (450)
T COG0403         150 AEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESA-DDG------DVFGVLVQYPN-T  221 (450)
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHC-CCC------CEEEEEEECCC-C
T ss_conf             999999987414767349966886877999998611257639999564225566532-467------73799997688-8


Q ss_pred             CC-CHHHHHHHHHHHHHCCEEEEEC-CCCCCCCCCCCCCEEEEEHHCCCCCCCCCC---CCCCCCCEE---EEEECCCCC
Q ss_conf             66-1346899999863136089861-311222347776401100001346521001---346565302---675245100
Q gi|254780486|r  176 DG-DKAPLDDLVKIANDYDGFIVVD-EAHATGVCGPLGKGLTHIIEERNNVIVMHS---CSKALGSSG---ALVGSNKII  247 (381)
Q Consensus       176 ~G-~~apL~~i~~l~~~y~~~LivD-Eah~~Gv~G~~G~G~~~~~~~~~~~iv~~T---lsKa~g~~G---G~i~~~~~i  247 (381)
T Consensus       222 ~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pP--------Ge~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~  293 (450)
T COG0403         222 FGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPP--------GEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEF  293 (450)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCC--------CCCCCCEEEECCCCCCCCCCCCCCCEEEEEEHHHH
T ss_conf             7734140999999986359779998263676455784--------10378669733760477767887563222375867


Q ss_pred             CCCC----------------------------C-CCCCCEECCCCCCCCHHHHHHHHHHHHHHCC-CH---HHHHHHHHH
Q ss_conf             1000----------------------------0-1211000013577502578988789886271-02---247899999
Q gi|254780486|r  248 YDYL----------------------------I-NYAKPFIYTTSPSPILAVVACEALKLIKRKP-AL---HKSLLQLIN  294 (381)
Q Consensus       248 i~~l----------------------------~-~~~~~~ifst~l~P~~~aaa~aal~~l~~~~-~~---~~~l~~~~~  294 (381)
T Consensus       294 ~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTn---QaLl-A~~As~y~~~hGp~GLk~iA~r~~~~a~  369 (450)
T COG0403         294 KRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTN---QALL-ALAASMYAVYHGPQGLKEIAERIHRLAA  369 (450)
T ss_pred             HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH---HHHH-HHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf             42599843304645899803201287788887640010155489---9999-9999999998696889999999999999


Q ss_pred             HHH-HHHHCCCCCCC--CCCEEEEEECCH-HHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             999-87641797899--897289995897-99999999999779189862288888887039996287899999999999
Q gi|254780486|r  295 ITD-KIANKKIGFSS--QSHIQSIVIGDN-KSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFD  370 (381)
Q Consensus       295 ~~~-~~~~~~~g~~~--~s~I~~v~~gd~-~~a~~~~~~L~~~Gi~v~~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~  370 (381)
T Consensus       370 ~la~~L~~~~~g~~~~~~~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~~~~-------~~~~ia~tEt~t~~~i~~l~~  442 (450)
T COG0403         370 YLAAGLKEIGAGVELVFDHFFDTFTVRVPEEVAEALLAAAIAGGINLRRVDA-------DTVLIALTETTTKEDIDALVA  442 (450)
T ss_pred             HHHHHHHHCCCCEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEECC-------CCEEEEEECCCCHHHHHHHHH
T ss_conf             9999876458864751424220488864636799999999854974145448-------815999512567899999999


Q ss_pred             HHHHHH
Q ss_conf             999998
Q gi|254780486|r  371 ILPQII  376 (381)
Q Consensus       371 ~l~~v~  376 (381)
T Consensus       443 ~~~~~~  448 (450)
T COG0403         443 AFGGVN  448 (450)
T ss_pred             HHHHHC
T ss_conf             975331