HHsearch alignment for GI: 254780486 and conserved domain: COG1104
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].
Probab=99.77 E-value=2.8e-15 Score=115.34 Aligned_cols=321 Identities=14% Similarity=0.133 Sum_probs=193.9
Q ss_pred CCCCC----CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--HHHHHHHHHHHHHCCCC--CEEEECCCCHHHHHHHHH-
Q ss_conf 56677----9889999999999863786887224436885--89999999984012888--516741660245655666-
Q gi|254780486|r 39 YLALS----SSTLLREKILSSLDSKIPIGSGGSRLLCGNY--NQHLELEEEAADFFGFE--KMLYFGSGYAANMAILST- 109 (381)
Q Consensus 39 YLGl~----~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~--~~~~~lE~~lA~~~g~e--~al~~~sG~~An~~~i~~- 109 (381)
T Consensus 4 YlD~~ATTp~~~~v~~~m~~~~~~~fg--NPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~ 81 (386)
T COG1104 4 YLDNAATTPVDPEVLEAMLPYLTEVFG--NPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGA 81 (386)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 555435688989999999999875318--961155757999999999999999983999780899569847777999864
Q ss_pred -HCC----CCCCCCHHHHCCHHHHHHHHHC---CCCCEEEC--C---CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
Q ss_conf -316----8971004542026775266640---87640305--6---881478997643100024786079714621576
Q gi|254780486|r 110 -LPQ----ATDLIVYDKLVHASIREGINSG---KAQAIAIP--H---NNINSFAENINKWRKSGGKGFPWIVVESIYSMD 176 (381)
Q Consensus 110 -l~~----~~d~ii~D~~~HaSi~~g~~ls---~a~~~~f~--H---nD~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~ 176 (381)
T Consensus 82 ~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~v~~~G~v~~e~L~~al~-------~~T~LVSim~aNnE~ 154 (386)
T COG1104 82 ALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR-------PDTILVSIMHANNET 154 (386)
T ss_pred HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCC-------CCCEEEEEEECCCCE
T ss_conf 8764235689858875543499999999998669757996888897287999998638-------884599998502682
Q ss_pred CCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEHHCC--CCCCCCCCCCCCCCCEE-EEEECCCCCC-CCCC
Q ss_conf 613468999998631360898613112223477764011000013--46521001346565302-6752451001-0000
Q gi|254780486|r 177 GDKAPLDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEER--NNVIVMHSCSKALGSSG-ALVGSNKIIY-DYLI 252 (381)
Q Consensus 177 G~~apL~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~~~--~~~iv~~TlsKa~g~~G-G~i~~~~~ii-~~l~ 252 (381)
T Consensus 155 G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gki-------p--i~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~~~~p~i 225 (386)
T COG1104 155 GTIQPIAEIGEICKERGILFHVDAVQAVGKI-------P--IDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVRLEPLI 225 (386)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEHHHHCCCE-------E--CCCCCCCCCEEEEEHHHCCCCCCEEEEEECCCCCCCCEE
T ss_conf 0112099999999975981797613325760-------0--460215765687311213699842799987998737446
Q ss_pred CCCCCEE---CCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCC-CC--C-----CCCCCEEEEEECCH
Q ss_conf 1211000---01357750257898878988627-102247899999999876417-97--8-----99897289995897
Q gi|254780486|r 253 NYAKPFI---YTTSPSPILAVVACEALKLIKRK-PALHKSLLQLINITDKIANKK-IG--F-----SSQSHIQSIVIGDN 320 (381)
Q Consensus 253 ~~~~~~i---fst~l~P~~~aaa~aal~~l~~~-~~~~~~l~~~~~~~~~~~~~~-~g--~-----~~~s~I~~v~~gd~ 320 (381)
T Consensus 226 -~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~g- 303 (386)
T COG1104 226 -HGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPG- 303 (386)
T ss_pred -ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEECC-
T ss_conf -047678997888755799999999999999877888999999999999999850996898688545789868999689-
Q ss_pred HHHHHHHHHHHHCCEEEEEEC----C---C-----C--C--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999997791898622----8---8-----8--8--8887039996287899999999999999998873
Q gi|254780486|r 321 KSCLNIAKNLQKKGFDIRAIR----P---P-----T--V--PINTARLRISITLNVDEPTIVKLFDILPQIISEG 379 (381)
Q Consensus 321 ~~a~~~~~~L~~~Gi~v~~i~----~---P-----t--V--p~~~~rlRi~v~a~~t~edi~~~~~~l~~v~~E~ 379 (381)
T Consensus 304 v~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~l 378 (386)
T COG1104 304 VEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRL 378 (386)
T ss_pred CCHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 757899986104086873364345899871499998099968837248997379998999999999999999998