HHsearch alignment for GI: 254780486 and conserved domain: COG3977
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism].
Probab=98.85 E-value=3.8e-06 Score=58.43 Aligned_cols=191 Identities=18% Similarity=0.182 Sum_probs=111.1
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEHH-CCCCCCCCCCCCCC-C-CCEEEEEECCCCCCCCCCCCCCC-
Q ss_conf 89999986313608986131122234777640110000-13465210013465-6-53026752451001000012110-
Q gi|254780486|r 182 LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIE-ERNNVIVMHSCSKA-L-GSSGALVGSNKIIYDYLINYAKP- 257 (381)
Q Consensus 182 L~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~-~~~~~iv~~TlsKa-~-g~~GG~i~~~~~ii~~l~~~~~~- 257 (381)
T Consensus 201 ~~kldalA~~~giPliIDnAYg~PFP~---iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIane~viqaitnmn~ii 277 (417)
T COG3977 201 LAKLDALARQHGIPLIIDNAYGVPFPG---IIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNGII 277 (417)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCC---EECCCCCCCCCCCEEEEEEHHHCCCCCCEEEEEECCHHHHHHHHHCCCEE
T ss_conf 998998742238967973566799786---20035641567877888314334898730357962699999997114535
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHCCCCC---CCCCCEEE-EEECC-HHHHHHHH
Q ss_conf 0001357750257898878988627-----102247899999999876417978---99897289-99589-79999999
Q gi|254780486|r 258 FIYTTSPSPILAVVACEALKLIKRK-----PALHKSLLQLINITDKIANKKIGF---SSQSHIQS-IVIGD-NKSCLNIA 327 (381)
Q Consensus 258 ~ifst~l~P~~~aaa~aal~~l~~~-----~~~~~~l~~~~~~~~~~~~~~~g~---~~~s~I~~-v~~gd-~~~a~~~~ 327 (381)
T Consensus 278 sLap~~~G~Aiaa~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp-~~~~~iHkpEGAIFlWLWf~dLPItt~~LY 356 (417)
T COG3977 278 SLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLP-EYRCLIHKPEGAIFLWLWFKDLPITTEELY 356 (417)
T ss_pred EECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEECCCCCEEEHHHHCCCCCCHHHHH
T ss_conf 3167875689999886024288899986438889889999999998657-765254268751541335535876689999
Q ss_pred HHHHHCCEEEEEEC--CCC----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99997791898622--888----8888703999628789999999999999999887
Q gi|254780486|r 328 KNLQKKGFDIRAIR--PPT----VPINTARLRISITLNVDEPTIVKLFDILPQIISE 378 (381)
Q Consensus 328 ~~L~~~Gi~v~~i~--~Pt----Vp~~~~rlRi~v~a~~t~edi~~~~~~l~~v~~E 378 (381)
T Consensus 357 q~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~--~~e~ie~Gva~lae~ve~ 411 (417)
T COG3977 357 QRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVP--EPEKIEKGVAILAEEVER 411 (417)
T ss_pred HHHHHCEEEEECCCCCCCCCCCCCCCCCCEEEEECCC--CHHHHHHHHHHHHHHHHH
T ss_conf 9998686899446324789998887612247875369--879999999999999999