HHsearch alignment for GI: 254780486 and conserved domain: PRK03715
>PRK03715 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=100.00 E-value=4.3e-33 Score=226.40 Aligned_cols=333 Identities=17% Similarity=0.263 Sum_probs=226.7
Q ss_pred HHHCCCEEEECCCCEEEECCCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9975983999289768980344---6566779889999999999863786887224436885899999999840128885
Q gi|254780486|r 16 IKSKGRHRQLLRRQDIWDFTSH---DYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFGFEK 92 (381)
Q Consensus 16 ~~~~g~~~~~~~~~~~l~f~s~---dYLGl~~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~lA~~~g~e~ 92 (381)
T Consensus 23 ~ra~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~Q~~~l~--~~--~~~~--~~~~~~~la~~L~~~~~~~~ 95 (395)
T PRK03715 23 THGKGSWLYDHTGKRYLDFIQGWAVNCLGH-CNPGMVEALAAQAEKLI--NP--SPAF--YNEPMAKLAGLLTQHSCFDK 95 (395)
T ss_pred EEEECCEEEECCCCEEEECCCCHHHHHHCC-CCHHHHHHHHHHHHHCC--CC--CCCC--CCHHHHHHHHHHHCCCCCCE
T ss_conf 983548899798799988231788777458-96999999999997547--67--7320--27899999999841558887
Q ss_pred EEEECCCCHHHHHHHHHH--------CCCCCCCCHHHHCCHHHHHHHHHCCCC---------CEEEC---CCCHHHHHHH
Q ss_conf 167416602456556663--------168971004542026775266640876---------40305---6881478997
Q gi|254780486|r 93 MLYFGSGYAANMAILSTL--------PQATDLIVYDKLVHASIREGINSGKAQ---------AIAIP---HNNINSFAEN 152 (381)
Q Consensus 93 al~~~sG~~An~~~i~~l--------~~~~d~ii~D~~~HaSi~~g~~ls~a~---------~~~f~---HnD~~~Le~~ 152 (381)
T Consensus 96 v~f~~sGsEAvE~AlKlAr~y~~~~~~gr~~ii~~~~~yHG~T~~~~s~sg~~~~~~~~~p~~~~~~~~~~~d~~~~~~~ 175 (395)
T PRK03715 96 VFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKL 175 (395)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99818758899999999999862468998459997578898740221046864445567898899675554558999973
Q ss_pred HHHHHHCCCCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCE-EEEEHHCCCCCCCC
Q ss_conf 64310002478607971462157661346----89999986313608986131122234777640-11000013465210
Q gi|254780486|r 153 INKWRKSGGKGFPWIVVESIYSMDGDKAP----LDDLVKIANDYDGFIVVDEAHATGVCGPLGKG-LTHIIEERNNVIVM 227 (381)
Q Consensus 153 l~~~~~~~~~~~~~vv~egv~Sm~G~~ap----L~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G-~~~~~~~~~~~iv~ 227 (381)
T Consensus 176 ~~-------~~~aAviiEPiqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~-tG-fGRtG~~fa~e~~gv~PDiv-- 244 (395)
T PRK03715 176 IT-------DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQ-TG-CGRTGTLFAYELAGIEPDIM-- 244 (395)
T ss_pred CC-------CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCC-CC-CCCCCCCCCCCCCCCCCCEE--
T ss_conf 49-------980799993788877985298899999999995189735620110-38-88666853000489999989--
Q ss_pred CCCCCCCCCEE---EEEECCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H---HH
Q ss_conf 01346565302---67524510010000121100001357750257898878988627102247899999999-8---76
Q gi|254780486|r 228 HSCSKALGSSG---ALVGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQLINITD-K---IA 300 (381)
Q Consensus 228 ~TlsKa~g~~G---G~i~~~~~ii~~l~~~~~~~ifst~l~P~~~aaa~aal~~l~~~~~~~~~l~~~~~~~~-~---~~ 300 (381)
T Consensus 245 -~~gKgl~g-G~Pl~av~~~~~i~~~-~~g~~g--~T~~gnpla~aaa~a~L~~i~~~~-l~~~~~~~g~~l~~~L~~l~ 318 (395)
T PRK03715 245 -TLGKGIGG-GVPLAALLAKAEVAVF-EAGDQG--GTYNGNPLMTAVGYAVISQLVAPG-FLEGVRARGEYLKEKLLELS 318 (395)
T ss_pred -EECCHHHC-CCCEEEEEECHHHCCC-CCCCCC--CCCCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHH
T ss_conf -97524428-9852899982674247-789888--798997189999999999996268-99999999999999999865
Q ss_pred HCC--CCCCCCCCEEEEEECCH--HHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 417--97899897289995897--99999999999779189862288888887039996287899999999999999998
Q gi|254780486|r 301 NKK--IGFSSQSHIQSIVIGDN--KSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFDILPQII 376 (381)
Q Consensus 301 ~~~--~g~~~~s~I~~v~~gd~--~~a~~~~~~L~~~Gi~v~~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~~l~~v~ 376 (381)
T Consensus 319 ~~~~i~~vRG~Gl~~~iel~~~~~~~~~~~~~~~~~~gll~~~------~-~~n~irl~PpL~it~~eid~~~~~l~~aL 391 (395)
T PRK03715 319 AERGLEGERGEGLLRALLLGKDIGPQIVEKARDMQPDGLLLNA------P-RPNLLRFMPALNVTTDEIDQMIAMLRSVL 391 (395)
T ss_pred CCCCCEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCEEEEC------C-CCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 0399135743558999996788708999999999839989922------8-99989997994388999999999999999
Q ss_pred HHH
Q ss_conf 873
Q gi|254780486|r 377 SEG 379 (381)
Q Consensus 377 ~E~ 379 (381)
T Consensus 392 ~~l 394 (395)
T PRK03715 392 DKL 394 (395)
T ss_pred HHH
T ss_conf 986