HHsearch alignment for GI: 254780486 and conserved domain: TIGR00461

>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=98.96  E-value=3.9e-09  Score=77.12  Aligned_cols=287  Identities=17%  Similarity=0.240  Sum_probs=164.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCEEEE-CCCCHHHH---HHHHHHC-----CCCCCCCHHHHCC----HHHHHHHHHCC
Q ss_conf             4368858999999998401288851674-16602456---5566631-----6897100454202----67752666408
Q gi|254780486|r   69 LLCGNYNQHLELEEEAADFFGFEKMLYF-GSGYAANM---AILSTLP-----QATDLIVYDKLVH----ASIREGINSGK  135 (381)
Q Consensus        69 ~~~G~~~~~~~lE~~lA~~~g~e~al~~-~sG~~An~---~~i~~l~-----~~~d~ii~D~~~H----aSi~~g~~ls~  135 (381)
T Consensus       545 Q~eGY~~lia~Le~wL~~iTGfDaislQPNsGaQGEYaGL~vIR~YheSrgE~hRniCLIP~SAHGTNPAS----A~MaG  620 (965)
T TIGR00461       545 QVEGYQELIAQLEKWLVEITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGEEHRNICLIPVSAHGTNPAS----AAMAG  620 (965)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHH----HHHCC
T ss_conf             22589999999988752105766244178888446678899999987605889874453077767887289----96169


Q ss_pred             CCCEEEC-----CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCH-HHHHHHHHHHHHCCEEEEECCCC---CCCC
Q ss_conf             7640305-----6881478997643100024786079714621576613-46899999863136089861311---2223
Q gi|254780486|r  136 AQAIAIP-----HNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDK-APLDDLVKIANDYDGFIVVDEAH---ATGV  206 (381)
Q Consensus       136 a~~~~f~-----HnD~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~-apL~~i~~l~~~y~~~LivDEah---~~Gv  206 (381)
T Consensus       621 m~VVpV~Cd~~GniDl~DL~~KAEq~g----d~Laa~MvT-YPSThGvfE~tI~~~~diVH~FGGqVYlDGANMNAQVGl  695 (965)
T TIGR00461       621 MQVVPVKCDKDGNIDLVDLKAKAEQYG----DELAAVMVT-YPSTHGVFEETIREVCDIVHRFGGQVYLDGANMNAQVGL  695 (965)
T ss_pred             CEEEEEEECCCCCEEHHHHHHHHHHCC----CCEEEEEEE-CCCCCCCCHHHHCCEEEEEECCCCEEEECCCCCCCCCCC
T ss_conf             868987656999500777788887506----652567750-587766432221001311442688475245664223366


Q ss_pred             CC--CCCCEEEEEHHCCCCCCCCCCCCCCCCC---EE----EEEECCCCCCCCC---------CCCC-CCEECCCCCCCC
Q ss_conf             47--7764011000013465210013465653---02----6752451001000---------0121-100001357750
Q gi|254780486|r  207 CG--PLGKGLTHIIEERNNVIVMHSCSKALGS---SG----ALVGSNKIIYDYL---------INYA-KPFIYTTSPSPI  267 (381)
Q Consensus       207 ~G--~~G~G~~~~~~~~~~~iv~~TlsKa~g~---~G----G~i~~~~~ii~~l---------~~~~-~~~ifst~l~P~  267 (381)
T Consensus       696 tsPgd~GADVcH-----------LNLHKTFcIPHGGGGPgmgPIgVKsHL~pflP~~~~~s~~~~~g~~~sig~vSaAPy  764 (965)
T TIGR00461       696 TSPGDLGADVCH-----------LNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKTDVVSVVELEGESKSIGAVSAAPY  764 (965)
T ss_pred             CCCCCCCCCHHH-----------HHCCCCEECCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEECCCC
T ss_conf             786110563434-----------305442012686787877522246402245888760001565312324354523654


Q ss_pred             HHHHHH---HH-HHHHHHCCCHHHH---HHHHHHHHH-HHHHCCCC--CC----CCC---CEEEEEEC-----CHHHHHH
Q ss_conf             257898---87-8988627102247---899999999-87641797--89----989---72899958-----9799999
Q gi|254780486|r  268 LAVVAC---EA-LKLIKRKPALHKS---LLQLINITD-KIANKKIG--FS----SQS---HIQSIVIG-----DNKSCLN  325 (381)
Q Consensus       268 ~~aaa~---aa-l~~l~~~~~~~~~---l~~~~~~~~-~~~~~~~g--~~----~~s---~I~~v~~g-----d~~~a~~  325 (381)
T Consensus       765 GsAsiLpISw~YI~MMG-~eGL~kas~vAiLnaNYma~RL~d-~ypiLf~nemg~~~~vAHEcIlDlRplK~~~gie~~D  842 (965)
T TIGR00461       765 GSASILPISWMYIKMMG-AEGLKKASEVAILNANYMAKRLKD-YYPILFVNEMGRDKRVAHECILDLRPLKKKAGIEALD  842 (965)
T ss_pred             CCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCCCEEEEEEECHHHHHHHHCCCHHH
T ss_conf             54146688999998522-013503557775626689988761-0765443115788831356763525545651765445


Q ss_pred             HHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999977918986228888888703999628789999999999999999887387
Q gi|254780486|r  326 IAKNLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFDILPQIISEGNS  381 (381)
Q Consensus       326 ~~~~L~~~Gi~v~~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~~l~~v~~E~~s  381 (381)
T Consensus       843 vAKRL~DyGFHAPT~sfPV~--GT--lMvEPTESEsl~ELDRF~DAMiaI~~Ei~a  894 (965)
T TIGR00461       843 VAKRLIDYGFHAPTLSFPVA--GT--LMVEPTESESLEELDRFCDAMIAIKEEIDA  894 (965)
T ss_pred             HHHHHHCCCCCCCCCCCCCC--CC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             67664115776533233678--74--200554656631245888899999999999