HHsearch alignment for GI: 254780486 and conserved domain: TIGR00461
>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=98.96 E-value=3.9e-09 Score=77.12 Aligned_cols=287 Identities=17% Similarity=0.240 Sum_probs=164.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEE-CCCCHHHH---HHHHHHC-----CCCCCCCHHHHCC----HHHHHHHHHCC
Q ss_conf 4368858999999998401288851674-16602456---5566631-----6897100454202----67752666408
Q gi|254780486|r 69 LLCGNYNQHLELEEEAADFFGFEKMLYF-GSGYAANM---AILSTLP-----QATDLIVYDKLVH----ASIREGINSGK 135 (381)
Q Consensus 69 ~~~G~~~~~~~lE~~lA~~~g~e~al~~-~sG~~An~---~~i~~l~-----~~~d~ii~D~~~H----aSi~~g~~ls~ 135 (381)
T Consensus 545 Q~eGY~~lia~Le~wL~~iTGfDaislQPNsGaQGEYaGL~vIR~YheSrgE~hRniCLIP~SAHGTNPAS----A~MaG 620 (965)
T TIGR00461 545 QVEGYQELIAQLEKWLVEITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGEEHRNICLIPVSAHGTNPAS----AAMAG 620 (965)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHH----HHHCC
T ss_conf 22589999999988752105766244178888446678899999987605889874453077767887289----96169
Q ss_pred CCCEEEC-----CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCH-HHHHHHHHHHHHCCEEEEECCCC---CCCC
Q ss_conf 7640305-----6881478997643100024786079714621576613-46899999863136089861311---2223
Q gi|254780486|r 136 AQAIAIP-----HNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDK-APLDDLVKIANDYDGFIVVDEAH---ATGV 206 (381)
Q Consensus 136 a~~~~f~-----HnD~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~-apL~~i~~l~~~y~~~LivDEah---~~Gv 206 (381)
T Consensus 621 m~VVpV~Cd~~GniDl~DL~~KAEq~g----d~Laa~MvT-YPSThGvfE~tI~~~~diVH~FGGqVYlDGANMNAQVGl 695 (965)
T TIGR00461 621 MQVVPVKCDKDGNIDLVDLKAKAEQYG----DELAAVMVT-YPSTHGVFEETIREVCDIVHRFGGQVYLDGANMNAQVGL 695 (965)
T ss_pred CEEEEEEECCCCCEEHHHHHHHHHHCC----CCEEEEEEE-CCCCCCCCHHHHCCEEEEEECCCCEEEECCCCCCCCCCC
T ss_conf 868987656999500777788887506----652567750-587766432221001311442688475245664223366
Q ss_pred CC--CCCCEEEEEHHCCCCCCCCCCCCCCCCC---EE----EEEECCCCCCCCC---------CCCC-CCEECCCCCCCC
Q ss_conf 47--7764011000013465210013465653---02----6752451001000---------0121-100001357750
Q gi|254780486|r 207 CG--PLGKGLTHIIEERNNVIVMHSCSKALGS---SG----ALVGSNKIIYDYL---------INYA-KPFIYTTSPSPI 267 (381)
Q Consensus 207 ~G--~~G~G~~~~~~~~~~~iv~~TlsKa~g~---~G----G~i~~~~~ii~~l---------~~~~-~~~ifst~l~P~ 267 (381)
T Consensus 696 tsPgd~GADVcH-----------LNLHKTFcIPHGGGGPgmgPIgVKsHL~pflP~~~~~s~~~~~g~~~sig~vSaAPy 764 (965)
T TIGR00461 696 TSPGDLGADVCH-----------LNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKTDVVSVVELEGESKSIGAVSAAPY 764 (965)
T ss_pred CCCCCCCCCHHH-----------HHCCCCEECCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEECCCC
T ss_conf 786110563434-----------305442012686787877522246402245888760001565312324354523654
Q ss_pred HHHHHH---HH-HHHHHHCCCHHHH---HHHHHHHHH-HHHHCCCC--CC----CCC---CEEEEEEC-----CHHHHHH
Q ss_conf 257898---87-8988627102247---899999999-87641797--89----989---72899958-----9799999
Q gi|254780486|r 268 LAVVAC---EA-LKLIKRKPALHKS---LLQLINITD-KIANKKIG--FS----SQS---HIQSIVIG-----DNKSCLN 325 (381)
Q Consensus 268 ~~aaa~---aa-l~~l~~~~~~~~~---l~~~~~~~~-~~~~~~~g--~~----~~s---~I~~v~~g-----d~~~a~~ 325 (381)
T Consensus 765 GsAsiLpISw~YI~MMG-~eGL~kas~vAiLnaNYma~RL~d-~ypiLf~nemg~~~~vAHEcIlDlRplK~~~gie~~D 842 (965)
T TIGR00461 765 GSASILPISWMYIKMMG-AEGLKKASEVAILNANYMAKRLKD-YYPILFVNEMGRDKRVAHECILDLRPLKKKAGIEALD 842 (965)
T ss_pred CCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCCCEEEEEEECHHHHHHHHCCCHHH
T ss_conf 54146688999998522-013503557775626689988761-0765443115788831356763525545651765445
Q ss_pred HHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999977918986228888888703999628789999999999999999887387
Q gi|254780486|r 326 IAKNLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFDILPQIISEGNS 381 (381)
Q Consensus 326 ~~~~L~~~Gi~v~~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~~l~~v~~E~~s 381 (381)
T Consensus 843 vAKRL~DyGFHAPT~sfPV~--GT--lMvEPTESEsl~ELDRF~DAMiaI~~Ei~a 894 (965)
T TIGR00461 843 VAKRLIDYGFHAPTLSFPVA--GT--LMVEPTESESLEELDRFCDAMIAIKEEIDA 894 (965)
T ss_pred HHHHHHCCCCCCCCCCCCCC--CC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 67664115776533233678--74--200554656631245888899999999999