HHsearch alignment for GI: 254780486 and conserved domain: TIGR00713

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=100.00  E-value=1.3e-37  Score=254.55  Aligned_cols=327  Identities=17%  Similarity=0.276  Sum_probs=238.9

Q ss_pred             HHCCCEEEECCCCEEEECCCCCCCC--CC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH-----HC
Q ss_conf             9759839992897689803446566--77-9889999999999863786887224436885899999999840-----12
Q gi|254780486|r   17 KSKGRHRQLLRRQDIWDFTSHDYLA--LS-SSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAAD-----FF   88 (381)
Q Consensus        17 ~~~g~~~~~~~~~~~l~f~s~dYLG--l~-~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~lA~-----~~   88 (381)
T Consensus        36 ~g~G~~l~DvDG~~YIDyv~-swGPLILGHahp~v~~Av~e~ler--G~syG~Pt----------E~Ei~lA~~i~~~v~  102 (434)
T TIGR00713        36 RGKGAYLYDVDGNEYIDYVL-SWGPLILGHAHPKVVEAVKEALER--GTSYGAPT----------EAEILLAKEIISRVP  102 (434)
T ss_pred             CCCCCEEEECCCCEEEHHHH-HCCCCCCCCCCHHHHHHHHHHHHH--CCCCCCCC----------HHHHHHHHHHHHHCC
T ss_conf             16767788338880012110-000201178976899999999973--01268998----------899999999986405


Q ss_pred             CC--CCEEEECCCCHHHHHHHH---HHCCCCCC-------------CCHHHHCCHHHHH--HHHHCCC-------CCEEE
Q ss_conf             88--851674166024565566---63168971-------------0045420267752--6664087-------64030
Q gi|254780486|r   89 GF--EKMLYFGSGYAANMAILS---TLPQATDL-------------IVYDKLVHASIRE--GINSGKA-------QAIAI  141 (381)
Q Consensus        89 g~--e~al~~~sG~~An~~~i~---~l~~~~d~-------------ii~D~~~HaSi~~--g~~ls~a-------~~~~f  141 (381)
T Consensus       103 ~~t~e~vRfVnSGTEATMsAvRLARG~TGR~~IiKFeGcYHGh~D~lLv~AGSGaaT~g~CG~P~SpGvP~~~~k~Tl~~  182 (434)
T TIGR00713       103 SVTEEMVRFVNSGTEATMSAVRLARGFTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGSCGLPTSPGVPEDFAKLTLVL  182 (434)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf             55465168621764889999998631058872788617641012320035452101046887788888701143113404


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf             5688147899764310002478607971462157661346----899999863136089861311222347776401100
Q gi|254780486|r  142 PHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAP----LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHI  217 (381)
Q Consensus       142 ~HnD~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~ap----L~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~  217 (381)
T Consensus       183 PYND~~a~~~~f~~~----G~~iAgvIvEPv~GNmGvvpP~~eFL~~Lr~lt~e~g~LLI~DEV~-TGFRva~~-GAQ~y  256 (434)
T TIGR00713       183 PYNDLEALEEAFEEY----GEEIAGVIVEPVAGNMGVVPPKKEFLEGLRELTEEYGALLIFDEVI-TGFRVALG-GAQEY  256 (434)
T ss_pred             CCCCHHHHHHHHHHC----CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCC-CHHHCCHH-HCCHH
T ss_conf             517389999999867----9834378861202576664885223589999998729577550221-01221332-15011


Q ss_pred             HHCCCCCCCCCCCCCCCCCEE---EEEECCCCCCCCCC-----CCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             001346521001346565302---67524510010000-----1211000013577502578988789886271022478
Q gi|254780486|r  218 IEERNNVIVMHSCSKALGSSG---ALVGSNKIIYDYLI-----NYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSL  289 (381)
Q Consensus       218 ~~~~~~~iv~~TlsKa~g~~G---G~i~~~~~ii~~l~-----~~~~~~ifst~l~P~~~aaa~aal~~l~~~~~~~~~l  289 (381)
T Consensus       257 fgV~PDl~---~lGKI~GG-GlP~gA~gGrrEiM~~laP~G~vYQAGTl----sGNPlam~AG~atLk~~~~~~~~Y~~l  328 (434)
T TIGR00713       257 FGVEPDLT---TLGKIIGG-GLPVGAFGGRREIMERLAPEGPVYQAGTL----SGNPLAMAAGLATLKLLDEEKGVYTEL  328 (434)
T ss_pred             CCCCCCCE---EECHHHCC-CCCCEEECCCHHHHHHHCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             37874103---42332337-64510122675688431788774456435----558899999999999853488834899


Q ss_pred             HHHHHHHHHHHH---CCCCCC----CCCCEEEEEEC-C-------------HHHHHHHHHHHHHCCEEEEEECCCCCCCC
Q ss_conf             999999998764---179789----98972899958-9-------------79999999999977918986228888888
Q gi|254780486|r  290 LQLINITDKIAN---KKIGFS----SQSHIQSIVIG-D-------------NKSCLNIAKNLQKKGFDIRAIRPPTVPIN  348 (381)
Q Consensus       290 ~~~~~~~~~~~~---~~~g~~----~~s~I~~v~~g-d-------------~~~a~~~~~~L~~~Gi~v~~i~~PtVp~~  348 (381)
T Consensus       329 ~~~~~~L~~g~~e~l~~~gip~~~~~~gSMf~~FFtd~~~V~ny~~A~~SD~e~F~~Ff~~mL~~GVylpPS~FEa~---  405 (434)
T TIGR00713       329 DELAKRLAEGLSEVLEDKGIPHTVNRVGSMFSLFFTDEEEVTNYADAKKSDTELFAKFFHEMLEKGVYLPPSQFEAC---  405 (434)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH---
T ss_conf             99999999999999982798589950440045665778898788999886189889999999858887898721155---


Q ss_pred             CCEEEEECCCCCCHHHHH----HHHHHHHHHHHHH
Q ss_conf             703999628789999999----9999999998873
Q gi|254780486|r  349 TARLRISITLNVDEPTIV----KLFDILPQIISEG  379 (381)
Q Consensus       349 ~~rlRi~v~a~~t~edi~----~~~~~l~~v~~E~  379 (381)
T Consensus       406 ------F~S~AH~~E~i~yaq~~ti~a~~~~f~~~  434 (434)
T TIGR00713       406 ------FISAAHTEEDIEYAQTNTIEAAEEVFAEL  434 (434)
T ss_pred             ------HHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             ------51677772117899999999999998409