HHsearch alignment for GI: 254780486 and conserved domain: TIGR00713
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=100.00 E-value=1.3e-37 Score=254.55 Aligned_cols=327 Identities=17% Similarity=0.276 Sum_probs=238.9
Q ss_pred HHCCCEEEECCCCEEEECCCCCCCC--CC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH-----HC
Q ss_conf 9759839992897689803446566--77-9889999999999863786887224436885899999999840-----12
Q gi|254780486|r 17 KSKGRHRQLLRRQDIWDFTSHDYLA--LS-SSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAAD-----FF 88 (381)
Q Consensus 17 ~~~g~~~~~~~~~~~l~f~s~dYLG--l~-~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~lA~-----~~ 88 (381)
T Consensus 36 ~g~G~~l~DvDG~~YIDyv~-swGPLILGHahp~v~~Av~e~ler--G~syG~Pt----------E~Ei~lA~~i~~~v~ 102 (434)
T TIGR00713 36 RGKGAYLYDVDGNEYIDYVL-SWGPLILGHAHPKVVEAVKEALER--GTSYGAPT----------EAEILLAKEIISRVP 102 (434)
T ss_pred CCCCCEEEECCCCEEEHHHH-HCCCCCCCCCCHHHHHHHHHHHHH--CCCCCCCC----------HHHHHHHHHHHHHCC
T ss_conf 16767788338880012110-000201178976899999999973--01268998----------899999999986405
Q ss_pred CC--CCEEEECCCCHHHHHHHH---HHCCCCCC-------------CCHHHHCCHHHHH--HHHHCCC-------CCEEE
Q ss_conf 88--851674166024565566---63168971-------------0045420267752--6664087-------64030
Q gi|254780486|r 89 GF--EKMLYFGSGYAANMAILS---TLPQATDL-------------IVYDKLVHASIRE--GINSGKA-------QAIAI 141 (381)
Q Consensus 89 g~--e~al~~~sG~~An~~~i~---~l~~~~d~-------------ii~D~~~HaSi~~--g~~ls~a-------~~~~f 141 (381)
T Consensus 103 ~~t~e~vRfVnSGTEATMsAvRLARG~TGR~~IiKFeGcYHGh~D~lLv~AGSGaaT~g~CG~P~SpGvP~~~~k~Tl~~ 182 (434)
T TIGR00713 103 SVTEEMVRFVNSGTEATMSAVRLARGFTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGSCGLPTSPGVPEDFAKLTLVL 182 (434)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 55465168621764889999998631058872788617641012320035452101046887788888701143113404
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf 5688147899764310002478607971462157661346----899999863136089861311222347776401100
Q gi|254780486|r 142 PHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAP----LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHI 217 (381)
Q Consensus 142 ~HnD~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~ap----L~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~ 217 (381)
T Consensus 183 PYND~~a~~~~f~~~----G~~iAgvIvEPv~GNmGvvpP~~eFL~~Lr~lt~e~g~LLI~DEV~-TGFRva~~-GAQ~y 256 (434)
T TIGR00713 183 PYNDLEALEEAFEEY----GEEIAGVIVEPVAGNMGVVPPKKEFLEGLRELTEEYGALLIFDEVI-TGFRVALG-GAQEY 256 (434)
T ss_pred CCCCHHHHHHHHHHC----CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCC-CHHHCCHH-HCCHH
T ss_conf 517389999999867----9834378861202576664885223589999998729577550221-01221332-15011
Q ss_pred HHCCCCCCCCCCCCCCCCCEE---EEEECCCCCCCCCC-----CCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 001346521001346565302---67524510010000-----1211000013577502578988789886271022478
Q gi|254780486|r 218 IEERNNVIVMHSCSKALGSSG---ALVGSNKIIYDYLI-----NYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSL 289 (381)
Q Consensus 218 ~~~~~~~iv~~TlsKa~g~~G---G~i~~~~~ii~~l~-----~~~~~~ifst~l~P~~~aaa~aal~~l~~~~~~~~~l 289 (381)
T Consensus 257 fgV~PDl~---~lGKI~GG-GlP~gA~gGrrEiM~~laP~G~vYQAGTl----sGNPlam~AG~atLk~~~~~~~~Y~~l 328 (434)
T TIGR00713 257 FGVEPDLT---TLGKIIGG-GLPVGAFGGRREIMERLAPEGPVYQAGTL----SGNPLAMAAGLATLKLLDEEKGVYTEL 328 (434)
T ss_pred CCCCCCCE---EECHHHCC-CCCCEEECCCHHHHHHHCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 37874103---42332337-64510122675688431788774456435----558899999999999853488834899
Q ss_pred HHHHHHHHHHHH---CCCCCC----CCCCEEEEEEC-C-------------HHHHHHHHHHHHHCCEEEEEECCCCCCCC
Q ss_conf 999999998764---179789----98972899958-9-------------79999999999977918986228888888
Q gi|254780486|r 290 LQLINITDKIAN---KKIGFS----SQSHIQSIVIG-D-------------NKSCLNIAKNLQKKGFDIRAIRPPTVPIN 348 (381)
Q Consensus 290 ~~~~~~~~~~~~---~~~g~~----~~s~I~~v~~g-d-------------~~~a~~~~~~L~~~Gi~v~~i~~PtVp~~ 348 (381)
T Consensus 329 ~~~~~~L~~g~~e~l~~~gip~~~~~~gSMf~~FFtd~~~V~ny~~A~~SD~e~F~~Ff~~mL~~GVylpPS~FEa~--- 405 (434)
T TIGR00713 329 DELAKRLAEGLSEVLEDKGIPHTVNRVGSMFSLFFTDEEEVTNYADAKKSDTELFAKFFHEMLEKGVYLPPSQFEAC--- 405 (434)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH---
T ss_conf 99999999999999982798589950440045665778898788999886189889999999858887898721155---
Q ss_pred CCEEEEECCCCCCHHHHH----HHHHHHHHHHHHH
Q ss_conf 703999628789999999----9999999998873
Q gi|254780486|r 349 TARLRISITLNVDEPTIV----KLFDILPQIISEG 379 (381)
Q Consensus 349 ~~rlRi~v~a~~t~edi~----~~~~~l~~v~~E~ 379 (381)
T Consensus 406 ------F~S~AH~~E~i~yaq~~ti~a~~~~f~~~ 434 (434)
T TIGR00713 406 ------FISAAHTEEDIEYAQTNTIEAAEEVFAEL 434 (434)
T ss_pred ------HHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ------51677772117899999999999998409