HHsearch alignment for GI: 254780486 and conserved domain: TIGR01140

>TIGR01140 CobD L-threonine-O-3-phosphate decarboxylase, putative; InterPro: IPR005860 L-threonine-O-3-phosphate decarboxylase (CobD) was shown to decarboxylate L-threonine O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, which is the precursor for the linkage between the nucleotide loop and the corrin ring in the biosynthesis of cobalamin . The molecule is a dimer where each subunit consists of a large and small domain . This family contains pyridoxal phosphate-binding class II aminotransferases closely related to histidinol-phosphate aminotransferase (HisC). ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=99.42  E-value=1.6e-11  Score=91.92  Aligned_cols=316  Identities=16%  Similarity=0.225  Sum_probs=188.7

Q ss_pred             CCCCEEEECCCC-CCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-EEEECCCCHH
Q ss_conf             289768980344-6566779-889999999999863786887224436885899999999840128885-1674166024
Q gi|254780486|r   26 LRRQDIWDFTSH-DYLALSS-STLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFGFEK-MLYFGSGYAA  102 (381)
Q Consensus        26 ~~~~~~l~f~s~-dYLGl~~-~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~lA~~~g~e~-al~~~sG~~A  102 (381)
T Consensus         2 ~~~~~lLDFsAninPlgpP~S~~aa~~~aLd~~-~rYP------------D~dY~hlrqA~AdH~q~~~dwvl~gnG~~e   68 (349)
T TIGR01140         2 IDDDDLLDFSANINPLGPPASVKAALAAALDAL-ERYP------------DDDYIHLRQALADHHQVAADWVLAGNGELE   68 (349)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HCCC------------CCCHHHHHHHHHHHHCCCCCCEECCCCCHH
T ss_conf             887430324345788887602045898742787-6088------------843189999986541256012545997278


Q ss_pred             H-HHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCE--EEC--C-------CCHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf             5-655666316897100454202677526664087640--305--6-------881478997643100024786079714
Q gi|254780486|r  103 N-MAILSTLPQATDLIVYDKLVHASIREGINSGKAQAI--AIP--H-------NNINSFAENINKWRKSGGKGFPWIVVE  170 (381)
Q Consensus       103 n-~~~i~~l~~~~d~ii~D~~~HaSi~~g~~ls~a~~~--~f~--H-------nD~~~Le~~l~~~~~~~~~~~~~vv~e  170 (381)
T Consensus        69 ~i~la~~t~~~~Gd~~~V~~P~F~eYgR~~~~~Gae~~ti~w~~~~~~~W~~~~dPsei-A~l~A~~---s~h~~lilct  144 (349)
T TIGR01140        69 SIRLAAETLVSRGDAVLVVAPAFAEYGRELELAGAELKTIRWSLDEADGWRVLRDPSEI-ALLDAVT---SEHDLLILCT  144 (349)
T ss_pred             HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHH-HHHCCCC---CCCCEEEEEC
T ss_conf             88998861478887578708870267999985698122345773168887455764566-5412688---3313531117


Q ss_pred             CCCCCCCCHHH---HHHHHHHHHHCCEEEEECCCCCCCCCCC-CCCEEEEEHHCCCCCCCCCCCCCCCCCEE---EEEEC
Q ss_conf             62157661346---8999998631360898613112223477-76401100001346521001346565302---67524
Q gi|254780486|r  171 SIYSMDGDKAP---LDDLVKIANDYDGFIVVDEAHATGVCGP-LGKGLTHIIEERNNVIVMHSCSKALGSSG---ALVGS  243 (381)
Q Consensus       171 gv~Sm~G~~ap---L~~i~~l~~~y~~~LivDEah~~Gv~G~-~G~G~~~~~~~~~~~iv~~TlsKa~g~~G---G~i~~  243 (381)
T Consensus       145 PnNP-tG~l~~r~~l~A~a~rc~~~N~~LllDEAF-~dF~pPG~E~~l~p~l~~~P~~~vlRSLTKfy~lPGLRlGylva  222 (349)
T TIGR01140       145 PNNP-TGDLLERDALRALADRCKAVNIELLLDEAF-LDFLPPGEETSLVPSLKDTPNVVVLRSLTKFYALPGLRLGYLVA  222 (349)
T ss_pred             CCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHCCHHHHHHHHHC
T ss_conf             6769-898622478999998888740466665565-15789864434341332689789971115540250244545551


Q ss_pred             CCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHHHHCC-C-CCCCCCCEEEE
Q ss_conf             510-010000121100001357750257898878988627102247899-----999999876417-9-78998972899
Q gi|254780486|r  244 NKI-IYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQ-----LINITDKIANKK-I-GFSSQSHIQSI  315 (381)
Q Consensus       244 ~~~-ii~~l~~~~~~~ifst~l~P~~~aaa~aal~~l~~~~~~~~~l~~-----~~~~~~~~~~~~-~-g~~~~s~I~~v  315 (381)
T Consensus       223 ~~Da~la~~r~~r~pW----~vnalAaaag~~al~---~s-ef~q~tw~wl~~erar~~qaL~~lP~l~v~Ps~an--fL  292 (349)
T TIGR01140       223 VDDALLARLRAARRPW----SVNALAAAAGAAALR---DS-EFRQETWRWLAEERARLRQALADLPLLDVYPSRAN--FL  292 (349)
T ss_pred             CCHHHHHHHHHHCCCC----CCCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CE
T ss_conf             6617899999742899----877689999999876---67-89999987436677899999971788755888876--11


Q ss_pred             EECCHHHHHHHHHHHHHC-CEEEE-EECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             958979999999999977-91898-6228888888703999628789999999999999999
Q gi|254780486|r  316 VIGDNKSCLNIAKNLQKK-GFDIR-AIRPPTVPINTARLRISITLNVDEPTIVKLFDILPQI  375 (381)
Q Consensus       316 ~~gd~~~a~~~~~~L~~~-Gi~v~-~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~~l~~v  375 (381)
T Consensus       293 Ll~~~~~~~dl~~~llt~~~IliRdc~~fpg--Lds~~~RVAvR---t~a~N~rLlaALa~v  349 (349)
T TIGR01140       293 LLKVEREDVDLQEELLTKERILIRDCLSFPG--LDSDYYRVAVR---TAAENDRLLAALADV  349 (349)
T ss_pred             EEECCCCCHHHHHHHHHHCCCCHHHCCCCCC--CCCCEEEEEEC---CHHHHHHHHHHHHCC
T ss_conf             4545898688999998743410012057888--88752788852---855478999996139