HHsearch alignment for GI: 254780486 and conserved domain: TIGR01140
>TIGR01140 CobD L-threonine-O-3-phosphate decarboxylase, putative; InterPro: IPR005860 L-threonine-O-3-phosphate decarboxylase (CobD) was shown to decarboxylate L-threonine O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, which is the precursor for the linkage between the nucleotide loop and the corrin ring in the biosynthesis of cobalamin . The molecule is a dimer where each subunit consists of a large and small domain . This family contains pyridoxal phosphate-binding class II aminotransferases closely related to histidinol-phosphate aminotransferase (HisC). ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=99.42 E-value=1.6e-11 Score=91.92 Aligned_cols=316 Identities=16% Similarity=0.225 Sum_probs=188.7
Q ss_pred CCCCEEEECCCC-CCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-EEEECCCCHH
Q ss_conf 289768980344-6566779-889999999999863786887224436885899999999840128885-1674166024
Q gi|254780486|r 26 LRRQDIWDFTSH-DYLALSS-STLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFGFEK-MLYFGSGYAA 102 (381)
Q Consensus 26 ~~~~~~l~f~s~-dYLGl~~-~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~lA~~~g~e~-al~~~sG~~A 102 (381)
T Consensus 2 ~~~~~lLDFsAninPlgpP~S~~aa~~~aLd~~-~rYP------------D~dY~hlrqA~AdH~q~~~dwvl~gnG~~e 68 (349)
T TIGR01140 2 IDDDDLLDFSANINPLGPPASVKAALAAALDAL-ERYP------------DDDYIHLRQALADHHQVAADWVLAGNGELE 68 (349)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HCCC------------CCCHHHHHHHHHHHHCCCCCCEECCCCCHH
T ss_conf 887430324345788887602045898742787-6088------------843189999986541256012545997278
Q ss_pred H-HHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCE--EEC--C-------CCHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 5-655666316897100454202677526664087640--305--6-------881478997643100024786079714
Q gi|254780486|r 103 N-MAILSTLPQATDLIVYDKLVHASIREGINSGKAQAI--AIP--H-------NNINSFAENINKWRKSGGKGFPWIVVE 170 (381)
Q Consensus 103 n-~~~i~~l~~~~d~ii~D~~~HaSi~~g~~ls~a~~~--~f~--H-------nD~~~Le~~l~~~~~~~~~~~~~vv~e 170 (381)
T Consensus 69 ~i~la~~t~~~~Gd~~~V~~P~F~eYgR~~~~~Gae~~ti~w~~~~~~~W~~~~dPsei-A~l~A~~---s~h~~lilct 144 (349)
T TIGR01140 69 SIRLAAETLVSRGDAVLVVAPAFAEYGRELELAGAELKTIRWSLDEADGWRVLRDPSEI-ALLDAVT---SEHDLLILCT 144 (349)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHH-HHHCCCC---CCCCEEEEEC
T ss_conf 88998861478887578708870267999985698122345773168887455764566-5412688---3313531117
Q ss_pred CCCCCCCCHHH---HHHHHHHHHHCCEEEEECCCCCCCCCCC-CCCEEEEEHHCCCCCCCCCCCCCCCCCEE---EEEEC
Q ss_conf 62157661346---8999998631360898613112223477-76401100001346521001346565302---67524
Q gi|254780486|r 171 SIYSMDGDKAP---LDDLVKIANDYDGFIVVDEAHATGVCGP-LGKGLTHIIEERNNVIVMHSCSKALGSSG---ALVGS 243 (381)
Q Consensus 171 gv~Sm~G~~ap---L~~i~~l~~~y~~~LivDEah~~Gv~G~-~G~G~~~~~~~~~~~iv~~TlsKa~g~~G---G~i~~ 243 (381)
T Consensus 145 PnNP-tG~l~~r~~l~A~a~rc~~~N~~LllDEAF-~dF~pPG~E~~l~p~l~~~P~~~vlRSLTKfy~lPGLRlGylva 222 (349)
T TIGR01140 145 PNNP-TGDLLERDALRALADRCKAVNIELLLDEAF-LDFLPPGEETSLVPSLKDTPNVVVLRSLTKFYALPGLRLGYLVA 222 (349)
T ss_pred CCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHCCHHHHHHHHHC
T ss_conf 6769-898622478999998888740466665565-15789864434341332689789971115540250244545551
Q ss_pred CCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHHHHCC-C-CCCCCCCEEEE
Q ss_conf 510-010000121100001357750257898878988627102247899-----999999876417-9-78998972899
Q gi|254780486|r 244 NKI-IYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQ-----LINITDKIANKK-I-GFSSQSHIQSI 315 (381)
Q Consensus 244 ~~~-ii~~l~~~~~~~ifst~l~P~~~aaa~aal~~l~~~~~~~~~l~~-----~~~~~~~~~~~~-~-g~~~~s~I~~v 315 (381)
T Consensus 223 ~~Da~la~~r~~r~pW----~vnalAaaag~~al~---~s-ef~q~tw~wl~~erar~~qaL~~lP~l~v~Ps~an--fL 292 (349)
T TIGR01140 223 VDDALLARLRAARRPW----SVNALAAAAGAAALR---DS-EFRQETWRWLAEERARLRQALADLPLLDVYPSRAN--FL 292 (349)
T ss_pred CCHHHHHHHHHHCCCC----CCCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CE
T ss_conf 6617899999742899----877689999999876---67-89999987436677899999971788755888876--11
Q ss_pred EECCHHHHHHHHHHHHHC-CEEEE-EECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 958979999999999977-91898-6228888888703999628789999999999999999
Q gi|254780486|r 316 VIGDNKSCLNIAKNLQKK-GFDIR-AIRPPTVPINTARLRISITLNVDEPTIVKLFDILPQI 375 (381)
Q Consensus 316 ~~gd~~~a~~~~~~L~~~-Gi~v~-~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~~l~~v 375 (381)
T Consensus 293 Ll~~~~~~~dl~~~llt~~~IliRdc~~fpg--Lds~~~RVAvR---t~a~N~rLlaALa~v 349 (349)
T TIGR01140 293 LLKVEREDVDLQEELLTKERILIRDCLSFPG--LDSDYYRVAVR---TAAENDRLLAALADV 349 (349)
T ss_pred EEECCCCCHHHHHHHHHHCCCCHHHCCCCCC--CCCCEEEEEEC---CHHHHHHHHHHHHCC
T ss_conf 4545898688999998743410012057888--88752788852---855478999996139