HHsearch alignment for GI: 254780486 and conserved domain: TIGR03235
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.65 E-value=2.3e-13 Score=103.49 Aligned_cols=279 Identities=15% Similarity=0.159 Sum_probs=166.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHCCCC--CEEEECCCCHHHHHHHHHHC----CCCC
Q ss_conf 98899999999998637868872-2443-688589999999984012888--51674166024565566631----6897
Q gi|254780486|r 44 SSTLLREKILSSLDSKIPIGSGG-SRLL-CGNYNQHLELEEEAADFFGFE--KMLYFGSGYAANMAILSTLP----QATD 115 (381)
Q Consensus 44 ~~p~v~~a~~~a~~~~~g~~~~~-sr~~-~G~~~~~~~lE~~lA~~~g~e--~al~~~sG~~An~~~i~~l~----~~~d 115 (381)
T Consensus 10 ~~~~v~~~~~~~~~~~~~N-p~s~~h~~g~~a~~~le~aR~~ia~~lga~~~eiiFTsg~Tes~nl~i~g~~~~~~~~g~ 88 (354)
T TIGR03235 10 VDPEVAEVMLPFLLEEFGN-PGSRTHEHGHNAKKAVERARKQVAEALGAQTKEVIFTSGATESNNIAILGLARAHENKGK 88 (354)
T ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999866879-730312899999999999999999980999677899688379999999999985026999
Q ss_pred CCCHHHHCCHHHHHHHHH---CCCCCEEECC-----CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 100454202677526664---0876403056-----88147899764310002478607971462157661346899999
Q gi|254780486|r 116 LIVYDKLVHASIREGINS---GKAQAIAIPH-----NNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVK 187 (381)
Q Consensus 116 ~ii~D~~~HaSi~~g~~l---s~a~~~~f~H-----nD~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~apL~~i~~ 187 (381)
T Consensus 89 ~ii~s~~EH~svl~~~~~l~~~G~~v~~~~vd~~G~id~~~l~~~l~~-------~t~lvsi~~~nnetG~i~pi~~i~~ 161 (354)
T TIGR03235 89 HIITTAIEHPAILEPARALERNGFTVTYLEVDESGRVSVEELADAIRD-------DTLLVSIMHVNNETGSLQPIREIAE 161 (354)
T ss_pred EEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCC-------CCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 999810030447999999996496899955578982877999987268-------9779999887566676388999988
Q ss_pred HHHHCCEEEEECCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCEE-EEEECCCCCCCC--CC--CCCCCEE---
Q ss_conf 863136089861311222347776401100001346521001346565302-675245100100--00--1211000---
Q gi|254780486|r 188 IANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGSSG-ALVGSNKIIYDY--LI--NYAKPFI--- 259 (381)
Q Consensus 188 l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~~~~~~iv~~TlsKa~g~~G-G~i~~~~~ii~~--l~--~~~~~~i--- 259 (381)
T Consensus 162 ~~~~~g~~~~vDa~Q~~g~~-------~id~~~~~~D~~s~S~HK~~GP~GiG~L~vr~~~~~~~~l~Pl~~GGgqe~g~ 234 (354)
T TIGR03235 162 LCEAREVFFHSDAAQVVGKI-------TVDLERDHIDLISLSGHKAYGPKGIGALYIRKRGKPKAPLAPIMFGGGQERGL 234 (354)
T ss_pred HHHCCCCEEEEECHHCCCCC-------CCCHHHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEECCCCCCCCC
T ss_conf 65225641562500115875-------55778849973763100034887149999804667666646403689886874
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCC-CCC------CCC-CCEEEEEECCHHHHHHHHHHH
Q ss_conf 013577502578988789886271-02247899999999876417-978------998-972899958979999999999
Q gi|254780486|r 260 YTTSPSPILAVVACEALKLIKRKP-ALHKSLLQLINITDKIANKK-IGF------SSQ-SHIQSIVIGDNKSCLNIAKNL 330 (381)
Q Consensus 260 fst~l~P~~~aaa~aal~~l~~~~-~~~~~l~~~~~~~~~~~~~~-~g~------~~~-s~I~~v~~gd~~~a~~~~~~L 330 (381)
T Consensus 235 r~GT~nv~~i~g~~~A~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~v~i~g~~~~r~p~i~s~~~~gi-~~~~l~~~L 313 (354)
T TIGR03235 235 RPGTLPVPLIVGMGEAAEIARRNAQAWGVRLRAMCNLLRDALQTSLPGVKLNGDPAETLPNILSFSFEGV-NPEALIRNL 313 (354)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEECCC-CHHHHHHHH
T ss_conf 6899659999999999999998289999999999999999997459965965882247588899997996-999999986
Q ss_pred HHCCEEEEE
Q ss_conf 977918986
Q gi|254780486|r 331 QKKGFDIRA 339 (381)
Q Consensus 331 ~~~Gi~v~~ 339 (381)
T Consensus 314 -~~~iavst 321 (354)
T TIGR03235 314 -KADAAVST 321 (354)
T ss_pred -CCCCEEEH
T ss_conf -39989982