HHsearch alignment for GI: 254780486 and conserved domain: TIGR03246
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=100.00 E-value=4.6e-35 Score=238.74 Aligned_cols=337 Identities=17% Similarity=0.218 Sum_probs=236.5
Q ss_pred HHHHHHCCCEEEECCCCEEEECCCCC---CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999759839992897689803446---566779889999999999863786887224436885899999999840128
Q gi|254780486|r 13 LQKIKSKGRHRQLLRRQDIWDFTSHD---YLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFG 89 (381)
Q Consensus 13 l~~~~~~g~~~~~~~~~~~l~f~s~d---YLGl~~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~lA~~~g 89 (381)
T Consensus 19 ~vi~ra~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~~~~~~---~-~--~~~~~~~la~~L~~~~~ 91 (397)
T TIGR03246 19 FIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGH-AHPELVKALIEQADKLWHIGN---G-Y--TNEPVLRLAKKLVDATF 91 (397)
T ss_pred CEEEEEECCEEEECCCCEEEECCCCHHHHHHCC-CCHHHHHHHHHHHHHCCCCCC---C-C--CCHHHHHHHHHHHHHCC
T ss_conf 428983649999698799999463487665578-988999999999965777768---6-3--48899999999975148
Q ss_pred CCCEEEECCCCHHHHHHHHHH---------CCCCCCCCHHHHCCHHHHHHHHHCCC------------CCEEECCCCHHH
Q ss_conf 885167416602456556663---------16897100454202677526664087------------640305688147
Q gi|254780486|r 90 FEKMLYFGSGYAANMAILSTL---------PQATDLIVYDKLVHASIREGINSGKA------------QAIAIPHNNINS 148 (381)
Q Consensus 90 ~e~al~~~sG~~An~~~i~~l---------~~~~d~ii~D~~~HaSi~~g~~ls~a------------~~~~f~HnD~~~ 148 (381)
T Consensus 92 ~~~v~f~~sGsEA~e~AlklAr~~~~~~~~~~k~~iis~~~~yHG~t~~~~s~~~~~~~~~~~~p~~~~~~~~~~~d~~~ 171 (397)
T TIGR03246 92 ADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAA 171 (397)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHH
T ss_conf 77699728677899999999999998517999768999727868985641046899655678889997642045233999
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEE-EEEHHCCCC
Q ss_conf 899764310002478607971462157661346----899999863136089861311222347776401-100001346
Q gi|254780486|r 149 FAENINKWRKSGGKGFPWIVVESIYSMDGDKAP----LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGL-THIIEERNN 223 (381)
Q Consensus 149 Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~ap----L~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~-~~~~~~~~~ 223 (381)
T Consensus 172 ~~~~~~~-------~iaAvi~EPv~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~-tG-fGRtG~~~a~~~~gv~PD 242 (397)
T TIGR03246 172 AKALISD-------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TG-VGRTGELYAYMHYGVTPD 242 (397)
T ss_pred HHHHHCC-------CEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE-EC-CCCCCCCCHHHCCCCCCC
T ss_conf 9985288-------73799993877888987388899999999999859358634122-07-877778314322698998
Q ss_pred CCCCCCCCCCCCCEE---EEEECCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HH
Q ss_conf 521001346565302---67524510010000121100001357750257898878988627102247899999999-87
Q gi|254780486|r 224 VIVMHSCSKALGSSG---ALVGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQLINITD-KI 299 (381)
Q Consensus 224 ~iv~~TlsKa~g~~G---G~i~~~~~ii~~l~~~~~~~ifst~l~P~~~aaa~aal~~l~~~~~~~~~l~~~~~~~~-~~ 299 (381)
T Consensus 243 iv---~~gK~l~g-G~P~sav~~~~~i~~~~~~~~h~~T~--~gnpl~~aaala~L~~i~~e~-l~~~~~~~g~~l~~~L 315 (397)
T TIGR03246 243 IL---TSAKALGG-GFPIGAMLTTTEIAAHLKVGTHGTTY--GGNPLACAVAGKVLDLVNTPE-LLAGVKQRHDLFVDGL 315 (397)
T ss_pred EE---EECCCCCC-CCEEEEEEECHHHHHHCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_conf 78---87422468-84048997448888651877738668--829999999999999998547-9999999999999999
Q ss_pred HH--CCCC----CCCCCCEEEEEECC--HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 64--1797----89989728999589--7999999999997791898622888888870399962878999999999999
Q gi|254780486|r 300 AN--KKIG----FSSQSHIQSIVIGD--NKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFDI 371 (381)
Q Consensus 300 ~~--~~~g----~~~~s~I~~v~~gd--~~~a~~~~~~L~~~Gi~v~~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~~ 371 (381)
T Consensus 316 ~~l~~~~~~i~~VRG~Glm~giel~~~~~~~a~~i~~~~~~~Gll~~~~-------g~n~lrl~PPL~it~eeid~~l~~ 388 (397)
T TIGR03246 316 EKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIA-------GPNVVRFAPSLVISDDDIDEGLAR 388 (397)
T ss_pred HHHHHHCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEC-------CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9987417987754224359999972786335999999999789289307-------999799978851899999999999
Q ss_pred HHHHHHHH
Q ss_conf 99998873
Q gi|254780486|r 372 LPQIISEG 379 (381)
Q Consensus 372 l~~v~~E~ 379 (381)
T Consensus 389 l~~al~~v 396 (397)
T TIGR03246 389 FERAIEQV 396 (397)
T ss_pred HHHHHHHH
T ss_conf 99999986