>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

Probab=99.86 E-value=6.2e-19 Score=138.16 Aligned_cols=344 Identities=13% Similarity=0.117 Sum_probs=187.1 Q ss_pred HHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 99999999759839992897689803446566779889999999999863786887224436885899999999840128 Q gi|254780486|r 10 EERLQKIKSKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFG 89 (381) Q Consensus 10 ~~~l~~~~~~g~~~~~~~~~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~lA~~~g 89 (381) T Consensus 13 ~~~~~~~~a~~---~~~~g~~iI~L~iG~P-d~~~P~~v~ea~~~al~-~~-~~Y~~~---~G~~~LReAia~~~~~~~~ 83 (394) T TIGR03538 13 FEKLAALLAGV---TPPASLPPIALSIGEP-KHATPAFVLEALRENLH-GL-STYPTT---KGLPELRQAIARWLERRFD 83 (394) T ss_pred HHHHHHHHHHH---HHHCCCCEEECCCCCC-CCCCCHHHHHHHHHHHC-CC-CCCCCC---CCCHHHHHHHHHHHHHHHC T ss_conf 99999999600---3408998787848889-99977999999999843-88-899999---8869999999999999739 Q ss_pred C------CCEEEECCCC-HHHHHHHHHHCCCCCC--CCHHHHCCHHHHHHHHHCCCCCEEEC---CC----CHHHHHHHH Q ss_conf 8------8516741660-2456556663168971--00454202677526664087640305---68----814789976 Q gi|254780486|r 90 F------EKMLYFGSGY-AANMAILSTLPQATDL--IVYDKLVHASIREGINSGKAQAIAIP---HN----NINSFAENI 153 (381) Q Consensus 90 ~------e~al~~~sG~-~An~~~i~~l~~~~d~--ii~D~~~HaSi~~g~~ls~a~~~~f~---Hn----D~~~Le~~l 153 (381) T Consensus 84 ~~~~~dp~~~I~vt~Ga~~al~~~~~~l~~pGd~~~V~~p~P~Y~~y~~~~~~~g~~~~~v~~~~e~~~~~d~~~l~~~~ 163 (394) T TIGR03538 84 LPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESV 163 (394) T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHC T ss_conf 88778967769989888999999999972999810899478866452999997599899758673458888999998745 Q ss_pred HHHHHCCCCCCCEEEECCCCCCCCCH---HHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC--EEEE---EHH--CCCC Q ss_conf 43100024786079714621576613---468999998631360898613112223477764--0110---000--1346 Q gi|254780486|r 154 NKWRKSGGKGFPWIVVESIYSMDGDK---APLDDLVKIANDYDGFIVVDEAHATGVCGPLGK--GLTH---IIE--ERNN 223 (381) Q Consensus 154 ~~~~~~~~~~~~~vv~egv~Sm~G~~---apL~~i~~l~~~y~~~LivDEah~~Gv~G~~G~--G~~~---~~~--~~~~ 223 (381) T Consensus 164 ~~------~tk~iil~sP~NP-TG~v~s~~~l~~l~~~a~~~~i~iisDE~Y~~l~~d~~~~p~~~~~~~~~~~~~~~~~ 236 (394) T TIGR03538 164 WR------RCQLLFVCSPGNP-TGAVLSLETLKKLIELADQYGFIIASDECYSELYFDEANPPAGLLQAAAALGRDDFRR 236 (394) T ss_pred CC------CCEEEEECCCCCC-CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCCCC T ss_conf 23------6659998899999-8977787999999999732676999806833278578889737877776625444476 Q ss_pred CCCCCCCCCCCCCEE---EEEECCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHH Q ss_conf 521001346565302---67524510010000121100001357750257898878988627102---247899999999 Q gi|254780486|r 224 VIVMHSCSKALGSSG---ALVGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPAL---HKSLLQLINITD 297 (381) Q Consensus 224 ~iv~~TlsKa~g~~G---G~i~~~~~ii~~l~~~~~~~ifst~l~P~~~aaa~aal~~l~~~~~~---~~~l~~~~~~~~ 297 (381) T Consensus 237 ~i~~~S~SK~~~~~G~RiG~~~~~~~~i~~~~~~-~~~~~~-~~~~~~q~a~~aa~~---~~~~~~~~r~~~~~r~~~~~ 311 (394) T TIGR03538 237 CLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRY-RTYHGC-AMPPPTQLASIAAWN---DEQHVRENRALYREKFAAVL 311 (394) T ss_pred EEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHH-CCCCCC-CCCHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHH T ss_conf 7999556544454675179995799999999985-223742-689999999999848---98999999999999999999 Q ss_pred HHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHH-HCCEEEEEECC---CC--CCCCCCEEEEECCCCCCHHHHHHHHHH Q ss_conf 8764179789989728999589799999999999-77918986228---88--888870399962878999999999999 Q gi|254780486|r 298 KIANKKIGFSSQSHIQSIVIGDNKSCLNIAKNLQ-KKGFDIRAIRP---PT--VPINTARLRISITLNVDEPTIVKLFDI 371 (381) Q Consensus 298 ~~~~~~~g~~~~s~I~~v~~gd~~~a~~~~~~L~-~~Gi~v~~i~~---Pt--Vp~~~~rlRi~v~a~~t~edi~~~~~~ 371 (381) T Consensus 312 ~~L~~~~~~~~P~Gg~y~w~~~~~~~~~f~~~ll~e~gV~v~PG~~F~~~~~~~~~G~g~iR~s~~~--~~e~l~ea~~R 389 (394) T TIGR03538 312 EILGPVLDLELPDAGFYLWPKVPGDDEAFARALYEEENVTVLPGRYLSREAEGVNPGAGRVRIALVA--PLEECVEAAER 389 (394) T ss_pred HHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCCEEEEEECC--CHHHHHHHHHH T ss_conf 9864279625798548999968999999999999868999987734165545788899989999759--89999999999 Q ss_pred HHHHH Q ss_conf 99998 Q gi|254780486|r 372 LPQII 376 (381) Q Consensus 372 l~~v~ 376 (381) T Consensus 390 l~~fl 394 (394) T TIGR03538 390 IRRFI 394 (394) T ss_pred HHHHC T ss_conf 99869

HHsearch alignment for GI: 254780486 and conserved domain: TIGR03538