HHsearch alignment for GI: 254780486 and conserved domain: TIGR03542
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.82 E-value=1.8e-17 Score=129.12 Aligned_cols=352 Identities=14% Similarity=0.072 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 789999999999759839992897689803446566---77988999999999986378688722443688589999999
Q gi|254780486|r 6 MSFYEERLQKIKSKGRHRQLLRRQDIWDFTSHDYLA---LSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEE 82 (381)
Q Consensus 6 ~~~~~~~l~~~~~~g~~~~~~~~~~~l~f~s~dYLG---l~~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~ 82 (381)
T Consensus 16 f~~i~~~~~~~~~~------~~~~dvI~L~----iGePdf~~P~~i~~a~~~ai~~-~~~~~-~~~-gY~~~~G~~~LRe 82 (402)
T TIGR03542 16 FSEINRRVNEFRKK------NPSASVIRLG----IGDTTQPLPASVIEAFHEAVDE-LASEE-TYR-GYGPEQGLPALRE 82 (402)
T ss_pred CHHHHHHHHHHHHH------CCCCCEEECC----CCCCCCCCCHHHHHHHHHHHHH-CCCCC-CCC-CCCCCCCHHHHHH
T ss_conf 08999999999985------8899855898----9998999899999999999971-22467-867-7797406499999
Q ss_pred HHHH-HCCC---CCEEEECCCCHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCEEEC---CCCHHH---HHH-
Q ss_conf 9840-1288---8516741660245655666316897100454202677526664087640305---688147---899-
Q gi|254780486|r 83 EAAD-FFGF---EKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAIP---HNNINS---FAE- 151 (381)
Q Consensus 83 ~lA~-~~g~---e~al~~~sG~~An~~~i~~l~~~~d~ii~D~~~HaSi~~g~~ls~a~~~~f~---HnD~~~---Le~- 151 (381)
T Consensus 83 aia~~~~~~~~~~d~I~vt~Ga~~~l~~l~a~l~pGD~Vii~~P~y~~Y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~ 162 (402)
T TIGR03542 83 AIAENDYRGRISPEEIFISDGAKCDIGRLQSIFGSDNTVAVQDPVYPAYVDTAVMTGRAGFADDTGQYRGIVYLPCTKEN 162 (402)
T ss_pred HHHHHHHCCCCCHHHEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHH
T ss_conf 99999756899889967777829999999998399998998388881579999985995301356655672567676243
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCHH---HHHHHHHHHHHCCEEEEECCCCCCCCCCCC-CCEEEEEHHCCCCCCCC
Q ss_conf 76431000247860797146215766134---689999986313608986131122234777-64011000013465210
Q gi|254780486|r 152 NINKWRKSGGKGFPWIVVESIYSMDGDKA---PLDDLVKIANDYDGFIVVDEAHATGVCGPL-GKGLTHIIEERNNVIVM 227 (381)
Q Consensus 152 ~l~~~~~~~~~~~~~vv~egv~Sm~G~~a---pL~~i~~l~~~y~~~LivDEah~~Gv~G~~-G~G~~~~~~~~~~~iv~ 227 (381)
T Consensus 163 ~~~~~~~~~~ktk~iiln~P~NP-TG~v~s~eel~~i~~la~~~~i~iIsDEiY~~~~~~~~~~~s~~~~~~~~~~~I~i 241 (402)
T TIGR03542 163 GFIPELPEERKIDIIYLCSPNNP-TGTVLTKEQLKELVDYANAHGSLILFDAAYSAFISDPSIPHSIYEIEGAKECAIEI 241 (402)
T ss_pred CCCCCCCCCCCCEEEEECCCCCC-CCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHCCCCCCCCCEECCCCCCEEEEC
T ss_conf 85722234557359998999798-87568999999999998750707960222887616898762011136652136731
Q ss_pred CCCCCCCCCEE---EEEECCCCCCC----CC-CC--CCCCEECCCCCCCCHHHHHHHHHHH--HHHCCCHHHHHHHHHHH
Q ss_conf 01346565302---67524510010----00-01--2110000135775025789887898--86271022478999999
Q gi|254780486|r 228 HSCSKALGSSG---ALVGSNKIIYD----YL-IN--YAKPFIYTTSPSPILAVVACEALKL--IKRKPALHKSLLQLINI 295 (381)
Q Consensus 228 ~TlsKa~g~~G---G~i~~~~~ii~----~l-~~--~~~~~ifst~l~P~~~aaa~aal~~--l~~~~~~~~~l~~~~~~ 295 (381)
T Consensus 242 ~S~SK~~~m~G~RiG~~i~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~a~~aal~~~~~~~~~~~~~~~~~~~~~ 320 (402)
T TIGR03542 242 NSFSKSLGFTGVRLGWTVVPKELTYADGHSVIQDWERRLCTTFNGASYPVQ-RAAEAAYAGEGLQPILEAISYYMENARI 320 (402)
T ss_pred CCCCCCCCCCCCCHHHEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 676240278340540211258775422799999999998762577559999-9999997378859999999999999999
Q ss_pred HHHHHHCCCCCCCC----CCEEEEEECCHHHHHHHHHHHH-HCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99876417978998----9728999589799999999999-779189862288888887039996287899999999999
Q gi|254780486|r 296 TDKIANKKIGFSSQ----SHIQSIVIGDNKSCLNIAKNLQ-KKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFD 370 (381)
Q Consensus 296 ~~~~~~~~~g~~~~----s~I~~v~~gd~~~a~~~~~~L~-~~Gi~v~~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~ 370 (381)
T Consensus 321 l~~~-l~~~g~~~~~~~ga~yl~~~~~~~~~~~~~~~~ll~e~~V~vvPG~~F-G~~g~g~vRls~a--~~~e~l~ea~~ 396 (402)
T TIGR03542 321 LREA-LEAAGFKVYGGENAPYLWVKTPEGISSWDFFDFLLYQYHIVGTPGSGF-GSSGEGFVRFSAF--GKRENIVAACE 396 (402)
T ss_pred HHHH-HHHCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHH-CCCCCCEEEEEEE--CCHHHHHHHHH
T ss_conf 9998-875695760799734897878999898999999998599999764476-8999896999972--99999999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780486|r 371 ILPQII 376 (381)
Q Consensus 371 ~l~~v~ 376 (381)
T Consensus 397 Rl~~~L 402 (402)
T TIGR03542 397 RIKHAL 402 (402)
T ss_pred HHHHHC
T ss_conf 999759