HHsearch alignment for GI: 254780486 and conserved domain: cd00609

>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.88  E-value=4e-20  Score=145.59  Aligned_cols=325  Identities=15%  Similarity=0.107  Sum_probs=183.5

Q ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--------CCCEEEECCCCHHHH
Q ss_conf             803446566779889999999999863786887224436885899999999840128--------885167416602456
Q gi|254780486|r   33 DFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFG--------FEKMLYFGSGYAANM  104 (381)
Q Consensus        33 ~f~s~dYLGl~~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~lA~~~g--------~e~al~~~sG~~An~  104 (381)
T Consensus         2 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~y~~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~al~   73 (350)
T cd00609           2 DLSIGEP-DFPPPPEVLEALAAAALRAGL-------LGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALS   73 (350)
T ss_pred             CCCCCCC-CCCCCHHHHHHHHHHHHCCCC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHEEEECCHHHHHH
T ss_conf             5858689-998799999999999747467-------58799988199999999998787389974797899269999999


Q ss_pred             HHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCEEECCC----CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHH
Q ss_conf             5566631689710045420267752666408764030568----814789976431000247860797146215766134
Q gi|254780486|r  105 AILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAIPHN----NINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKA  180 (381)
Q Consensus       105 ~~i~~l~~~~d~ii~D~~~HaSi~~g~~ls~a~~~~f~Hn----D~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~a  180 (381)
T Consensus        74 ~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~-~~~~~~--~~~~~~v~l~~P~N-PtG~~~  149 (350)
T cd00609          74 LLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLE-LLEAAK--TPKTKLLYLNNPNN-PTGAVL  149 (350)
T ss_pred             HHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHH-HHHHHC--CCCCCEEEECCCCC-CCCCCC
T ss_conf             99999808989899947986306999998299412556560038676689-999856--88997898569949-725463


Q ss_pred             H---HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCEE---EEEECCCC-CCCCCCC
Q ss_conf             6---899999863136089861311222347776401100001346521001346565302---67524510-0100001
Q gi|254780486|r  181 P---LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGSSG---ALVGSNKI-IYDYLIN  253 (381)
Q Consensus       181 p---L~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~~~~~~iv~~TlsKa~g~~G---G~i~~~~~-ii~~l~~  253 (381)
T Consensus       150 ~~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~  229 (350)
T cd00609         150 SEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKK  229 (350)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf             37889899999862386268853412203699888967855779808999117230379453779999888999999986


Q ss_pred             CCCCEECCCCCCCCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCCC----CCCCCEEEEEECCHHHHHHHHH
Q ss_conf             2110000135775025789887898862-7102247899999999876417978----9989728999589799999999
Q gi|254780486|r  254 YAKPFIYTTSPSPILAVVACEALKLIKR-KPALHKSLLQLINITDKIANKKIGF----SSQSHIQSIVIGDNKSCLNIAK  328 (381)
Q Consensus       254 ~~~~~ifst~l~P~~~aaa~aal~~l~~-~~~~~~~l~~~~~~~~~~~~~~~g~----~~~s~I~~v~~gd~~~a~~~~~  328 (381)
T Consensus       230 ~~~~~-~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~  307 (350)
T cd00609         230 LLPYT-T-SGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLER  307 (350)
T ss_pred             HCCCC-C-CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCHHHHHHH
T ss_conf             24214-6-789879999999998682999999999999999999999985799612079955399898999982999999


Q ss_pred             HHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             9997791898622888888870399962878999999999999999
Q gi|254780486|r  329 NLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFDILPQ  374 (381)
Q Consensus       329 ~L~~~Gi~v~~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~~l~~  374 (381)
T Consensus       308 ~l~~~gv~v~~g~~f-~~~~~~~iRl~~~~--~~~~~~~~~~rl~~  350 (350)
T cd00609         308 LLLEAGVVVRPGSAF-GEGGEGFVRLSFAT--PEEELEEALERLAE  350 (350)
T ss_pred             HHHHCCEEEEECHHH-CCCCCCEEEEEECC--CHHHHHHHHHHHCC
T ss_conf             999799999924564-88998979999639--89999999998578