HHsearch alignment for GI: 254780486 and conserved domain: cd00609
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.88 E-value=4e-20 Score=145.59 Aligned_cols=325 Identities=15% Similarity=0.107 Sum_probs=183.5
Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--------CCCEEEECCCCHHHH
Q ss_conf 803446566779889999999999863786887224436885899999999840128--------885167416602456
Q gi|254780486|r 33 DFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFG--------FEKMLYFGSGYAANM 104 (381)
Q Consensus 33 ~f~s~dYLGl~~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~lA~~~g--------~e~al~~~sG~~An~ 104 (381)
T Consensus 2 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~y~~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~al~ 73 (350)
T cd00609 2 DLSIGEP-DFPPPPEVLEALAAAALRAGL-------LGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALS 73 (350)
T ss_pred CCCCCCC-CCCCCHHHHHHHHHHHHCCCC-------CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHEEEECCHHHHHH
T ss_conf 5858689-998799999999999747467-------58799988199999999998787389974797899269999999
Q ss_pred HHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCEEECCC----CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHH
Q ss_conf 5566631689710045420267752666408764030568----814789976431000247860797146215766134
Q gi|254780486|r 105 AILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAIPHN----NINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKA 180 (381)
Q Consensus 105 ~~i~~l~~~~d~ii~D~~~HaSi~~g~~ls~a~~~~f~Hn----D~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~a 180 (381)
T Consensus 74 ~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~-~~~~~~--~~~~~~v~l~~P~N-PtG~~~ 149 (350)
T cd00609 74 LLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLE-LLEAAK--TPKTKLLYLNNPNN-PTGAVL 149 (350)
T ss_pred HHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHH-HHHHHC--CCCCCEEEECCCCC-CCCCCC
T ss_conf 99999808989899947986306999998299412556560038676689-999856--88997898569949-725463
Q ss_pred H---HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCEE---EEEECCCC-CCCCCCC
Q ss_conf 6---899999863136089861311222347776401100001346521001346565302---67524510-0100001
Q gi|254780486|r 181 P---LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGSSG---ALVGSNKI-IYDYLIN 253 (381)
Q Consensus 181 p---L~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~~~~~~iv~~TlsKa~g~~G---G~i~~~~~-ii~~l~~ 253 (381)
T Consensus 150 ~~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~ 229 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKK 229 (350)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 37889899999862386268853412203699888967855779808999117230379453779999888999999986
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCCC----CCCCCEEEEEECCHHHHHHHHH
Q ss_conf 2110000135775025789887898862-7102247899999999876417978----9989728999589799999999
Q gi|254780486|r 254 YAKPFIYTTSPSPILAVVACEALKLIKR-KPALHKSLLQLINITDKIANKKIGF----SSQSHIQSIVIGDNKSCLNIAK 328 (381)
Q Consensus 254 ~~~~~ifst~l~P~~~aaa~aal~~l~~-~~~~~~~l~~~~~~~~~~~~~~~g~----~~~s~I~~v~~gd~~~a~~~~~ 328 (381)
T Consensus 230 ~~~~~-~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~ 307 (350)
T cd00609 230 LLPYT-T-SGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLER 307 (350)
T ss_pred HCCCC-C-CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCHHHHHHH
T ss_conf 24214-6-789879999999998682999999999999999999999985799612079955399898999982999999
Q ss_pred HHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 9997791898622888888870399962878999999999999999
Q gi|254780486|r 329 NLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFDILPQ 374 (381)
Q Consensus 329 ~L~~~Gi~v~~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~~l~~ 374 (381)
T Consensus 308 ~l~~~gv~v~~g~~f-~~~~~~~iRl~~~~--~~~~~~~~~~rl~~ 350 (350)
T cd00609 308 LLLEAGVVVRPGSAF-GEGGEGFVRLSFAT--PEEELEEALERLAE 350 (350)
T ss_pred HHHHCCEEEEECHHH-CCCCCCEEEEEECC--CHHHHHHHHHHHCC
T ss_conf 999799999924564-88998979999639--89999999998578