HHsearch alignment for GI: 254780486 and conserved domain: cd00613
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.32 E-value=8.8e-11 Score=87.35 Aligned_cols=279 Identities=16% Similarity=0.162 Sum_probs=152.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCC--CEEEECCCCHHHHHHHHHHCC---CCCCCCHHHHCCHHHHH----HHHHCCCCCE
Q ss_conf 43688589999999984012888--516741660245655666316---89710045420267752----6664087640
Q gi|254780486|r 69 LLCGNYNQHLELEEEAADFFGFE--KMLYFGSGYAANMAILSTLPQ---ATDLIVYDKLVHASIRE----GINSGKAQAI 139 (381)
Q Consensus 69 ~~~G~~~~~~~lE~~lA~~~g~e--~al~~~sG~~An~~~i~~l~~---~~d~ii~D~~~HaSi~~----g~~ls~a~~~ 139 (381)
T Consensus 58 ~sQG~Lq~~~e~Qs~i~eLtGmdv~naSl~d~a~A~aEa~~ma~~~~~~~r~~vlv~~~~hp~~~~v~~t~~~~~g~~i~ 137 (398)
T cd00613 58 ISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVV 137 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 86999999999999999986888356326876779999999999986268998997787780369999998612586589
Q ss_pred EECCC-----CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHH-HHHHHHHHHHCCEEEEECCCC-CCCCCCCCCC
Q ss_conf 30568-----8147899764310002478607971462157661346-899999863136089861311-2223477764
Q gi|254780486|r 140 AIPHN-----NINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAP-LDDLVKIANDYDGFIVVDEAH-ATGVCGPLGK 212 (381)
Q Consensus 140 ~f~Hn-----D~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~ap-L~~i~~l~~~y~~~LivDEah-~~Gv~G~~G~ 212 (381)
T Consensus 138 ~v~~~~~G~~d~~~l~~~~~~-------~~a~v~v~~P-n~~G~~e~~~~~i~~~~h~~gal~~~~~~~~~l~~l----- 204 (398)
T cd00613 138 EVPSDEGGTVDLEALKEEVSE-------EVAALMVQYP-NTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGL----- 204 (398)
T ss_pred EECCCCCCCCCHHHHHHHCCC-------CEEEEEECCC-CCCEEEECCHHHHHHHHHHCCCEEEEEECCHHHHCC-----
T ss_conf 942666777465888875078-------8599995279-996278519999999998759869997440353155-----
Q ss_pred EEEEEHHCCCCCCCCCCCCC-----CCCC-EEEEEECCCCCCCCCC-----------------------------CCCCC
Q ss_conf 01100001346521001346-----5653-0267524510010000-----------------------------12110
Q gi|254780486|r 213 GLTHIIEERNNVIVMHSCSK-----ALGS-SGALVGSNKIIYDYLI-----------------------------NYAKP 257 (381)
Q Consensus 213 G~~~~~~~~~~~iv~~TlsK-----a~g~-~GG~i~~~~~ii~~l~-----------------------------~~~~~ 257 (381)
T Consensus 205 ---~~Pg~~GaDI~~g~~q~~g~P~~~GGP~~G~~a~~~~l~r~lPgrivg~t~D~~G~~~~~ltlqtreqhIrRekats 281 (398)
T cd00613 205 ---KPPGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATS 281 (398)
T ss_pred ---CCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCEEE
T ss_conf ---57100478779852511466566688744326679987735899856504788887421544135433367775288
Q ss_pred EECCCCCCCCHHHHHHHHHHHHH--HCC---CHHHHHHHHHHHHHHHHHCCCCC-CCCCC-EEE--EEECC--HHHHHHH
Q ss_conf 00013577502578988789886--271---02247899999999876417978-99897-289--99589--7999999
Q gi|254780486|r 258 FIYTTSPSPILAVVACEALKLIK--RKP---ALHKSLLQLINITDKIANKKIGF-SSQSH-IQS--IVIGD--NKSCLNI 326 (381)
Q Consensus 258 ~ifst~l~P~~~aaa~aal~~l~--~~~---~~~~~l~~~~~~~~~~~~~~~g~-~~~s~-I~~--v~~gd--~~~a~~~ 326 (381)
T Consensus 282 nict~qa-----l~al~a~~Y~~~lG~~GL~~va~~~~~~A~Yl~~~L~~~~~~~~~~~~~f~EFvi~~~~~~~~~~~~l 356 (398)
T cd00613 282 NICTGQA-----LLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDL 356 (398)
T ss_pred CCCHHHH-----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
T ss_conf 1643278-----99999999999848863889999999999999999986389826899866699997687547689999
Q ss_pred HHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999977918986228888888703999628789999999999999
Q gi|254780486|r 327 AKNLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFDIL 372 (381)
Q Consensus 327 ~~~L~~~Gi~v~~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~~l 372 (381)
T Consensus 357 ~k~~i~~G~~~~~~y~~-~---~~~lli~~TE~~skediD~l~~aL 398 (398)
T cd00613 357 AKALIDGGFHAPTMYLP-V---DGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred HHHCCCCCCCCCCCCCC-C---CCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 97362158286646888-8---997999805899999999999749