HHsearch alignment for GI: 254780486 and conserved domain: cd06452
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=100.00 E-value=1.4e-37 Score=254.33 Aligned_cols=310 Identities=15% Similarity=0.165 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHCCCCCCC-----CCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 9999999998637868872-----24436885899999999840128885167416602456556663168971004542
Q gi|254780486|r 48 LREKILSSLDSKIPIGSGG-----SRLLCGNYNQHLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKL 122 (381)
Q Consensus 48 v~~a~~~a~~~~~g~~~~~-----sr~~~G~~~~~~~lE~~lA~~~g~e~al~~~sG~~An~~~i~~l~~~~d~ii~D~~ 122 (381)
T Consensus 13 l~~~a~~a~~-~~gdgysvcd~c~~~ld~~~~P~i~efe~~aAeflG~d~A~~V~Ggt~Gnqa~i~t~c~~GD~VIv~~n 91 (361)
T cd06452 13 LTPEARKALI-EWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCEKGDWVVVDGL 91 (361)
T ss_pred CCHHHHHHHH-HHCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCC
T ss_conf 8999999999-867864714520565334769988999999998719966999468520899999998479988985575
Q ss_pred CCHHHHHHHHHCCCCCEEECCC-------CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCEE
Q ss_conf 0267752666408764030568-------814789976431000247860797146215766134689999986313608
Q gi|254780486|r 123 VHASIREGINSGKAQAIAIPHN-------NINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGF 195 (381)
Q Consensus 123 ~HaSi~~g~~ls~a~~~~f~Hn-------D~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~apL~~i~~l~~~y~~~ 195 (381)
T Consensus 92 aH~S~~~a~~laG~~~~~v~~~~~~~~~i~pe~~~~~Iee~~~e~g~~p~Lilit~~dy~yG~~~dl~~I~~iah~y~iP 171 (361)
T cd06452 92 AHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVP 171 (361)
T ss_pred CHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 12889988886384699956776856651889999999999986189964999966787736631379999999985996
Q ss_pred EEECCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCEE--EEEECCCCCCCCCCCCCCC-------EECCCCC-C
Q ss_conf 9861311222347776401100001346521001346565302--6752451001000012110-------0001357-7
Q gi|254780486|r 196 IVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGSSG--ALVGSNKIIYDYLINYAKP-------FIYTTSP-S 265 (381)
Q Consensus 196 LivDEah~~Gv~G~~G~G~~~~~~~~~~~iv~~TlsKa~g~~G--G~i~~~~~ii~~l~~~~~~-------~ifst~l-~ 265 (381)
T Consensus 172 vlvD~A~~~g~lpv~a~~~-------gaD~v~~s~hK~~~a~~p~gvL~~~~~~~~~v~R~~~~~~~K~~~~Lg~t~~~~ 244 (361)
T cd06452 172 LLLNGAYTVGRMPVSGKEL-------GADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGA 244 (361)
T ss_pred EEECCCCCCCCCCCCHHHC-------CCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHCCCCCCC
T ss_conf 8971542247579875450-------796899865655534574378850506788887411011045778746786551
Q ss_pred CC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC-------------CCCCEEEEEECC-HHHHHHHHHH
Q ss_conf 50--2578988789886271022478999999998764179789-------------989728999589-7999999999
Q gi|254780486|r 266 PI--LAVVACEALKLIKRKPALHKSLLQLINITDKIANKKIGFS-------------SQSHIQSIVIGD-NKSCLNIAKN 329 (381)
Q Consensus 266 P~--~~aaa~aal~~l~~~~~~~~~l~~~~~~~~~~~~~~~g~~-------------~~s~I~~v~~gd-~~~a~~~~~~ 329 (381)
T Consensus 245 ~~~~lmAS~~~~~~~v~~~~----eev~~ar~~~~el~kI~G~~~~ge~p~~~dl~~~dt~~~~~~~~~~~~~G~~L~~~ 320 (361)
T cd06452 245 PLVTLMASFPHVKERVKRWD----EEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSE 320 (361)
T ss_pred HHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEECCCCCEEEEECCCCCCCHHHHH
T ss_conf 79999807299999998777----89999999999984284531215577767745614786324410478650069999
Q ss_pred HHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99779189862288888887039996287899999999999999998
Q gi|254780486|r 330 LQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFDILPQII 376 (381)
Q Consensus 330 L~~~Gi~v~~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~~l~~v~ 376 (381)
T Consensus 321 L~~rgI~~~~------~-g~t~~~~~~tyG~t~e~i~~l~~a~keI~ 360 (361)
T cd06452 321 LKKRGIHGIK------P-GLTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred HHHCCCEEEC------C-CCCCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 9876976871------6-85337999995168889999999999975