RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus str. psy62] (381 letters) >gnl|CDD|30505 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]. Length = 388 Score = 344 bits (883), Expect = 3e-95 Identities = 143/387 (36%), Positives = 219/387 (56%), Gaps = 20/387 (5%) Query: 6 MSFYEERLQKIKSKGRHRQLLRR------------QDIWDFTSHDYLALSSSTLLREKIL 53 +SF + LQ +K++G +R L + + +F S+DYL L+S L E Sbjct: 4 LSFLRQALQALKAEGLYRGLRALDRRQGLAIRADGRKVLNFCSNDYLGLASHPELIEAAK 63 Query: 54 SSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQA 113 +++ + +G+GGSRL+ G + H+ELEEE ADF G E L F SG+ AN+ +LS L + Sbjct: 64 AAIR-RYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKK 122 Query: 114 TDLIVYDKLVHASIREGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIY 173 DLI D+L HASI +GI +A+ HN+++ + + R G IV E ++ Sbjct: 123 GDLIFSDELNHASIIDGIRLSRAEVRRFKHNDLDHLEALLEEAR-ENGARRKLIVTEGVF 181 Query: 174 SMDGDKAPLDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHI--IEERNNVIVMHSCS 231 SMDGD APL +LV++A Y + VDEAHA GV GP G+GL +E I++ + Sbjct: 182 SMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLG 241 Query: 232 KALGSSGALVGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQ 291 KALGSSG + + + DYL N A+PFI++T+ P +A A AL++++ P + L + Sbjct: 242 KALGSSGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQE 301 Query: 292 LINITDKIANKKIGF---SSQSHIQSIVIGDNKSCLNIAKNLQKKGFDIRAIRPPTVPIN 348 L + K +G S+S I +++GD + L ++ L ++G + AIRPPTVP Sbjct: 302 LAAFFRSLL-KALGLVLLPSESPIIPVILGDEERALEASRALLEEGIYVSAIRPPTVPKG 360 Query: 349 TARLRISITLNVDEPTIVKLFDILPQI 375 TARLRI++T E I +L + L ++ Sbjct: 361 TARLRITLTAAHTEEDIDRLAEALSEV 387 >gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.. Length = 349 Score = 307 bits (788), Expect = 4e-84 Identities = 136/352 (38%), Positives = 203/352 (57%), Gaps = 9/352 (2%) Query: 29 QDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFF 88 + + +F S+DYL L++ + E +LD K +G+GGSRL+ G + H ELEEE A+F Sbjct: 1 KKVLNFCSNDYLGLANHPEVIEAAKEALD-KYGVGAGGSRLISGTSDLHEELEEELAEFH 59 Query: 89 GFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAIPHNNINS 148 G E L F SGYAAN +LSTL DLI+ D L HASI +GI A+ HN++ Sbjct: 60 GKEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMED 119 Query: 149 FAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATGVCG 208 + + + R+ GK IV E +YSMDGD APL +LV +A Y + VDEAH+ GV G Sbjct: 120 LEKLLREARRPYGKK--LIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYG 177 Query: 209 PLGKGLTHIIEERNNV-IVMHSCSKALGSSGALVGSNKIIYDYLINYAKPFIYTTSPSPI 267 P G+G+ ++V I+M + KA G+ G + +K + DYL +YA+ FI++TS P Sbjct: 178 PHGRGVEEFGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIFSTSLPPA 237 Query: 268 LAVVACEALKLIKRKPALHKSLLQLINITDKIANKKIGF---SSQSHIQSIVIGD-NKSC 323 +A A AL++++ P + L + + + K++GF S SHI +IGD Sbjct: 238 VAAAALAALEVLQGGPERRERLQENVRYL-RRGLKELGFPVGGSPSHIIPPLIGDDPAKA 296 Query: 324 LNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFDILPQI 375 + + L ++G ++AIR PTVP TARLRIS++ + I +L + L ++ Sbjct: 297 VAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 >gnl|CDD|36573 KOG1359, KOG1359, KOG1359, Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]. Length = 417 Score = 161 bits (409), Expect = 3e-40 Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 20/347 (5%) Query: 16 IKSKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYN 75 I+ KG +++L +F +++YL LSS + +L+ + G R +CG + Sbjct: 60 IQVKGSDKKIL------NFCANNYLGLSSHPEIINAGQKALE-EYGAGLSSVRFICGTQD 112 Query: 76 QHLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREGINSGK 135 H LE + A F G E + + S + AN + D + D+L HASI +GI K Sbjct: 113 IHKLLESKIAQFHGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLCK 172 Query: 136 AQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGF 195 H ++ + K +V + ++SMDGD APL+++ ++A Y Sbjct: 173 RYR----HVDVFDLEHCLISACKMR---LKLVVTDGVFSMDGDIAPLEEISQLAKKYGAL 225 Query: 196 IVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSC-SKALG-SSGALVGSNKIIYDYLIN 253 + +DE HATG G G+G +V +++S KALG +SG K + L Sbjct: 226 LFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLLRQ 285 Query: 254 YAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQLINITDKIANKKIGF--SSQSH 311 ++P++++ S P + +A +A L+ +S Q + + GF S SH Sbjct: 286 RSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQS-RQANTQRFREFMEAAGFTISGASH 344 Query: 312 -IQSIVIGDNKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISIT 357 I +++GD + +A L K+G + P VP AR+R+ I+ Sbjct: 345 PICPVMLGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQIS 391 >gnl|CDD|36574 KOG1360, KOG1360, KOG1360, 5-aminolevulinate synthase [Coenzyme transport and metabolism]. Length = 570 Score = 156 bits (395), Expect = 1e-38 Identities = 108/383 (28%), Positives = 178/383 (46%), Gaps = 44/383 (11%) Query: 8 FYEERLQKIKSKGRHR---QLLRRQDIWDFT---------------SHDYLALSSSTLLR 49 F+ E + K K +R + R + S+DYL +S + Sbjct: 132 FFREEIDKKKRDHSYRVFKNVNRLAKEFPLAHRYSEATEKKVTVWCSNDYLGMSRHPEVL 191 Query: 50 EKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFGFEKMLYFGSGYAANMAILST 109 + + +LD + G+GG+R + G+ H+ LE E AD E L F S + AN + L T Sbjct: 192 DAMHDTLD-RHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFT 250 Query: 110 LPQAT-DLIVY-DKLVHASIREGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWI 167 L + ++ D+ HAS+ +GI + + HN+++ + + KS P I Sbjct: 251 LAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRHNDLDHLEQLLQSSPKS----VPKI 306 Query: 168 VV-ESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNV-- 224 V E+++SMDG PL++L +A+ Y +DE HA G+ GP G G + ER+ V Sbjct: 307 VAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAG----VGERDGVMH 362 Query: 225 ---IVMHSCSKALGSSGALVGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKR 281 I+ + KA G G + + + + D + +YA FI+TTS P++ A EA++++K Sbjct: 363 KVDIISGTLGKAFGCVGGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKS 422 Query: 282 KPALHKSLLQLINITD-KIANKKIGF---SSQSHIQSIVIGD---NKSCLNIAKNLQKKG 334 + N+ K ++G + SHI + +GD K +I + K Sbjct: 423 EEGRVLRRQHQRNVKYVKQLLMELGIPVIPNPSHIIPVRVGDAALAKQASDIL--ISKHN 480 Query: 335 FDIRAIRPPTVPINTARLRISIT 357 ++AI PTV T RLRI+ T Sbjct: 481 IYVQAINYPTVARGTERLRIAPT 503 >gnl|CDD|36571 KOG1357, KOG1357, KOG1357, Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]. Length = 519 Score = 140 bits (354), Expect = 7e-34 Identities = 90/373 (24%), Positives = 166/373 (44%), Gaps = 37/373 (9%) Query: 33 DFTSHDYLALSSST-LLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFGFE 91 + S++YL + S E L S D K + SR G +H ELEE A F G E Sbjct: 140 NLGSYNYLGFAQSVGPCAEASLKSFD-KYGLSRCSSRHEAGTTEEHKELEELVARFLGVE 198 Query: 92 KMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAIPHNNINSFAE 151 + F G+A N + +L LI+ D+L HAS+ G A HN++ E Sbjct: 199 DAIVFSMGFATNSMNIPSLLGKGSLIISDELNHASLITGARLSGATTRVFRHNDMQGL-E 257 Query: 152 NINKWRKSGG---KGFPW----IVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHAT 204 + + G PW I VE IYSM+G L ++V + Y ++ +DEAH+ Sbjct: 258 RLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSI 317 Query: 205 GVCGPLGKGLTHI--IEERNNVIVMHSCSKALGSSGALVGSNKIIYDYLINYAKPFIYTT 262 G G G+G+ ++ + I+M + +K+ G++G + +K + DYL + +Y T Sbjct: 318 GAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAGGYIAGSKELIDYLRTPSPSALYAT 377 Query: 263 SPSPILAVVACEALKLIKRKPALHKSLLQLINITD-----KIANKKIGFSSQSHIQSIVI 317 S SP +A ++K I + ++ ++ + + + +K+GF IV Sbjct: 378 SLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGF--------IVY 429 Query: 318 GDNKS------------CLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTI 365 G+N S + ++ + ++ + + P P+ +R R ++ + + + Sbjct: 430 GNNDSPVVPLLLYGPAKIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDL 489 Query: 366 VKLFDILPQIISE 378 + +++ ++ E Sbjct: 490 DRALEVIDRVGDE 502 >gnl|CDD|143923 pfam00155, Aminotran_1_2, Aminotransferase class I and II. Length = 351 Score = 132 bits (335), Expect = 1e-31 Identities = 78/329 (23%), Positives = 131/329 (39%), Gaps = 35/329 (10%) Query: 62 IGSGGSRLLCGNYNQHLELEEEAADFFGFEKMLY--------FGSGYAANMAILSTLPQA 113 +GG+R L G + EL E A F G +L FGSG AN + L Sbjct: 26 ALAGGTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAAVVFGSGAGAN---IEALIFL 82 Query: 114 T----DLIVYDKLVHASIREGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVV 169 D I+ +AS + + P + N F + + + + ++ Sbjct: 83 LANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKEKPKVVLH 142 Query: 170 ESIYSMDGDKAPLDDLVKIA---NDYDGFIVVDEAHATGVCGPLGKGLTHI-IEERNNVI 225 ES ++ G APL++L K+ +++ ++VDEA+A V G T + E N++ Sbjct: 143 ESPHNPTGTVAPLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEGPNLL 202 Query: 226 VMHSCSKALGSSGALVG---SNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRK 282 V+ S SKA G +G VG N + L A+PF +T A + L Sbjct: 203 VVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYSSTHLQAAAAAALSDPL---LVA 259 Query: 283 PALHKSLLQLINITDKIAN--KKIGFS---SQSHIQSIVIGDNKSCLNIAKNLQK-KGFD 336 L + ++ D + + + G S SQ+ + D ++ +A+ L + G Sbjct: 260 SELEEMRQRIKERRDYLRDGLEAAGLSVLPSQAGFFLLTGLDPETAKELAQVLLEEVGVY 319 Query: 337 IRAIRPPTVPINTARLRISITLNVDEPTI 365 + P VP LRI++ E + Sbjct: 320 VTPGSSPGVP---GWLRITVA-GGTEEEL 344 >gnl|CDD|36572 KOG1358, KOG1358, KOG1358, Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]. Length = 467 Score = 124 bits (312), Expect = 4e-29 Identities = 77/310 (24%), Positives = 145/310 (46%), Gaps = 9/310 (2%) Query: 16 IKSKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYN 75 ++S + +D+ +F S ++L L + ++E+ +L K +GS G R G + Sbjct: 81 LESVMLPHVTIDGKDVLNFASANFLGLIENEEIKEEASFTL-RKYGVGSCGPRGFYGTID 139 Query: 76 QHLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREGINSGK 135 HL+LE+ A F G E + + G++ + + + D+I D+ V+ +I++G+ + Sbjct: 140 VHLDLEKRIAKFMGTEDAIVYSYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSR 199 Query: 136 AQAIAIPHNNINSFA----ENINKWRKSGGKGFP--WIVVESIYSMDGDKAPLDDLVKIA 189 + HN++ E ++ +K+ K +IVVE +Y+ GD PL ++VK+ Sbjct: 200 STISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLK 259 Query: 190 NDYDGFIVVDEAHATGVCGPLGKGLT-HIIEERNNV-IVMHSCSKALGSSGALVGSNKII 247 N Y +++DE+ + GV G G+G+T H ++ IV S AL S G I Sbjct: 260 NKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGGGFCAGKSFI 319 Query: 248 YDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQLINITDKIANKKIGFS 307 D+ + ++ S P LA A +A+ + + P + + L + + GF Sbjct: 320 ADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSNSGFI 379 Query: 308 SQSHIQSIVI 317 +S +I Sbjct: 380 VSGSPESPII 389 >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).. Length = 170 Score = 59.3 bits (144), Expect = 2e-09 Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 8/167 (4%) Query: 77 HLELEEEAADFF--GFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIRE-GINS 133 ELEE+ A G +K ++ SG AN A L L D ++ D H S Sbjct: 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAEL 61 Query: 134 GKAQAIAIPHNNINSFAENINKWRKSGGKGFP-WIVVESIYSMDGDKAPLDDLVKIANDY 192 A+ + +P ++ ++ + K IV+ + G PL ++ KIA +Y Sbjct: 62 AGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEY 121 Query: 193 DGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGSSGA 239 ++VD A A G I E +V+ S K LG G Sbjct: 122 GILLLVDAASAGGA---SPAPGVLIPEGGADVVTF-SLHKNLGGEGG 164 >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.. Length = 350 Score = 52.0 bits (125), Expect = 3e-07 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 14/104 (13%) Query: 182 LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHII----EERNNVIVMHSCSKALGSS 237 L++L ++A + I+ DEA+A + G + VIV+ S SK G Sbjct: 154 LEELAELAKKHGILIISDEAYA----ELVYDGEPPPALALLDAYERVIVLRSFSKTFGLP 209 Query: 238 GA----LVGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALK 277 G L+ + + + + P+ + PS + A AL Sbjct: 210 GLRIGYLIAPPEELLE-RLKKLLPYTT-SGPSTLSQAAAAAALD 251 >gnl|CDD|30428 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]. Length = 356 Score = 48.0 bits (114), Expect = 4e-06 Identities = 41/211 (19%), Positives = 80/211 (37%), Gaps = 18/211 (8%) Query: 176 DGDKAPLDDLVKIAN--DYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKA 233 G P ++L + G +V+DEA+ L ++ N+IV+ + SKA Sbjct: 158 TGTLLPREELRALLEALPEGGLVVIDEAYI-EFSPESSLEL---LKYPPNLIVLRTFSKA 213 Query: 234 LGSSGALVG---SNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLI-KRKPALHKSL 289 G +G VG +N + L PF +SP+ A+ A + + + + Sbjct: 214 FGLAGLRVGYAIANPELIAALNKVRPPF-NVSSPALAAAIAALRDADYLEESVERIREER 272 Query: 290 LQLINITDKIANKKIGFSSQSHIQSIVIGDNKSCLNIAKNLQKKGFDIRAIRPPTVPINT 349 +L + + S + + +V + +A+ L KKG +R + Sbjct: 273 ERLYAALKALGLFGVFPSQANFV--LVRVPDAEAAALAEALLKKGILVRDCSSVGLLPG- 329 Query: 350 ARLRISITLNVDEPTIVKLFDILPQIISEGN 380 LRI++ + +L L +++ Sbjct: 330 -YLRITVGTPEEND---RLLAALREVLKGLG 356 >gnl|CDD|32165 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]. Length = 557 Score = 47.6 bits (113), Expect = 6e-06 Identities = 46/215 (21%), Positives = 74/215 (34%), Gaps = 34/215 (15%) Query: 77 HLELEEEAADFFGFEKMLYFGSGY-AANMAILSTLPQATDLIVYDKLVHASIREGINSGK 135 E +E AA FG + + +G AN A+++ + D ++ D+ H SI G+ Sbjct: 72 IKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGL---- 127 Query: 136 AQAIAIPHNNINSFAENIN--------------KWRKSGGKGFPWIVVESIYSMDGDKAP 181 A A P S K ++ Y DG Sbjct: 128 ILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLA--VITNPTY--DGVCYN 183 Query: 182 LDDLVKIANDYDGFIVVDEAHAT--GVCGPLGKGLTHIIEERNNVIVMHSCSKALGS--- 236 L +V++ + Y +++ DEAH L + V S K L + Sbjct: 184 LRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPES----ALNGGADFVTQSTHKLLAALSQ 239 Query: 237 -SGALVGSNKIIYDYLINYAKPFIYTTSPS-PILA 269 S V + + N A +TSPS P++A Sbjct: 240 ASMIHVKDGRAVNHERFNEALMMHQSTSPSYPLMA 274 >gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.. Length = 294 Score = 44.9 bits (107), Expect = 4e-05 Identities = 47/210 (22%), Positives = 72/210 (34%), Gaps = 26/210 (12%) Query: 77 HLELEEEAADFFGFEKMLYF----GSGYAANMAILSTLPQATDLIVYDKLVHASIREGIN 132 E +E AA FG + F G+ + IL+ D I+ D+ H S+ G+ Sbjct: 61 IKEAQELAARAFGAKH--TFFLVNGTSSSNKAVILAVCG-PGDKILIDRNCHKSVINGLV 117 Query: 133 SGKAQAIAIPHNNINSF--------AENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDD 184 A + + N + E K ++ Y G L Sbjct: 118 LSGAVPVYL-KPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTY--YGICYNLRK 174 Query: 185 LVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGS----SGAL 240 +V+ A+ ++VDEAH G L IV+ S K L + S Sbjct: 175 IVEEAHHRGLPVLVDEAH--GAHFRFHPILPSSAAMAGADIVVQSTHKTLPALTQGSMIH 232 Query: 241 VGSNKIIYDYLINYAKPFIYTTSPS-PILA 269 V + + D + +TSPS ILA Sbjct: 233 VKGDLVNPDRVNEALNLHQ-STSPSYLILA 261 >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.. Length = 413 Score = 42.2 bits (100), Expect = 2e-04 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 22/127 (17%) Query: 167 IVVESIYSMDGDKAP----LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERN 222 ++VE I G P L L ++ + ++ DE TG G GK E Sbjct: 195 VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEV-QTG-FGRTGKMFAF---EHF 249 Query: 223 NV---IVMHSCSKALGSS---GALVGSNKIIYDYLINYAKPFIY--TTSPSPILAVVACE 274 V IV + K LG GA++G +I A P ++ T +P+ A Sbjct: 250 GVEPDIV--TLGKGLGGGLPLGAVLGREEI---MDAFPAGPGLHGGTFGGNPLACAAALA 304 Query: 275 ALKLIKR 281 L++++ Sbjct: 305 VLEVLEE 311 >gnl|CDD|30971 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]. Length = 396 Score = 42.1 bits (99), Expect = 3e-04 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 18/186 (9%) Query: 72 GNYNQHLELEEEAADFFGFEKMLYFGSGYAA-NMAILSTLPQATDLIVYDKLVHASIREG 130 GN LEE A+ G E F SG AA + A+L+ L +++ D L + R Sbjct: 61 GNPT-RDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLF 119 Query: 131 INSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIAN 190 + + + + ++ K + +E+ + + + + ++A Sbjct: 120 EKILQKFGVEVTFVDPGDDEALEAAIKEPNTKL---VFLETPSNPLLEVPDIPAIARLAK 176 Query: 191 DYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGS-----SGALVGSNK 245 Y +VVD AT V L + L + IV+HS +K LG G ++ N+ Sbjct: 177 AYGALVVVDNTFATPV---LQRPLELGAD-----IVVHSATKYLGGHSDVLGGVVLTPNE 228 Query: 246 IIYDYL 251 +Y+ L Sbjct: 229 ELYELL 234 >gnl|CDD|32700 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]. Length = 426 Score = 41.4 bits (97), Expect = 5e-04 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 31/173 (17%) Query: 80 LEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIV---------YDKLVHASIREG 130 LEE A G L SG AA + L A D IV Y+ H R G Sbjct: 67 LEERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLG 126 Query: 131 INSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIAN 190 I + + ++ +F I++ K+ + E+I + D ++ + +IA+ Sbjct: 127 I-----EVRFVDPDDPENFEAAIDENTKA-------VFAETIGNPGLDVLDIEAIAEIAH 174 Query: 191 DYDGFIVVDEAHATGV-CGPLGKGLTHIIEERNNVIVMHSCSKALGSSGALVG 242 + ++VD AT C P+ G IV+HS +K +G G +G Sbjct: 175 RHGVPLIVDNTFATPYLCRPIEHGAD---------IVVHSATKYIGGHGTAIG 218 >gnl|CDD|30785 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]. Length = 393 Score = 40.7 bits (95), Expect = 6e-04 Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 21/192 (10%) Query: 97 GSGYAANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAIP-HNNINSFAENINK 155 G+ A +A L+ L ++++ D + S + + + +P N F ++ Sbjct: 97 GAKEALFLAFLALLNPGDEVLIPDP-GYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLED 155 Query: 156 WRKSGGKGFPWIVVES-------IYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATGVC- 207 + I++ S +YS K L +V++A ++D I+ DE + V Sbjct: 156 LEAAITPKTKAIILNSPNNPTGAVYS----KEELKAIVELAREHDIIIISDEIYEELVYD 211 Query: 208 GPLGKGLTHIIEERNNVIVMHSCSKALGSSGA----LVGSNKIIYDYLINYAKPFIYTTS 263 G + + R+ I ++S SK G +G +VG + + L Y TS Sbjct: 212 GAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKS---YLTS 268 Query: 264 PSPILAVVACEA 275 +P A A A Sbjct: 269 CAPTPAQYAAIA 280 >gnl|CDD|32191 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]. Length = 342 Score = 39.5 bits (92), Expect = 0.002 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 7/118 (5%) Query: 79 ELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREG----INSG 134 LE+ A+ FG E L+ SG AN L+ Q + ++ + H E G Sbjct: 39 ALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICHETAHIYTDECGAPEFFGG 98 Query: 135 KAQAIAIPHNNINSFAENINKWRKSGGK---GFPWIVVESIYSMDGDKAPLDDLVKIA 189 + +P + E++ + P V+E+ + G PLD+L I+ Sbjct: 99 GQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAIS 156 >gnl|CDD|144709 pfam01212, Beta_elim_lyase, Beta-eliminating lyase. Length = 288 Score = 38.7 bits (91), Expect = 0.002 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 20/139 (14%) Query: 79 ELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREG-----INS 133 LE+ A+ FG E L+ SG AN L + D ++ + H E + Sbjct: 36 RLEDRVAELFGKEAALFVPSGTMANQLALMAHCRRGDEVICGEPAHIYFDETGGHAELGG 95 Query: 134 GKAQAIAIPHNN---INSFAENINKWRKSGGKGFPWIVVE--------SIYSMDGDKAPL 182 + + + I I +E + S++ L Sbjct: 96 AQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEE----L 151 Query: 183 DDLVKIANDYDGFIVVDEA 201 ++ IA ++ + +D A Sbjct: 152 REIRAIAREHGIPLHLDGA 170 >gnl|CDD|144757 pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain. Length = 417 Score = 39.0 bits (91), Expect = 0.003 Identities = 45/217 (20%), Positives = 75/217 (34%), Gaps = 26/217 (11%) Query: 77 HLELEEEAADFFGFEKMLYFGSGY-AANMAILSTLPQATDLIVYDKLVHASIREGINSGK 135 E ++ AA FG +K + +G AN + + D ++ D+ H SI + Sbjct: 68 IKEAQKYAARVFGADKSYFVVNGTSGANKTVGMAVCTPGDTVLIDRNCHKSIHHALMMSG 127 Query: 136 AQAIAI-PHNN-------INSFAENINKWRK-----SGGKGFPWIVVE-SIYSMDGDKAP 181 A + + P N I ++ KG V+ Y DG Sbjct: 128 ATPVYLEPTRNAYGIIGGIPLHEFQEETIKEALAEVPPAKGPRLAVITNGTY--DGTIYN 185 Query: 182 LDDLVKIANDYDGFIVVDEAH-ATGVCGPLGKGLTHIIEERNN---VIVMHSCSKALG-- 235 ++V +I+ D A P+ + + + N +IV S K L Sbjct: 186 AKEIVDTLGHLSDYILFDSAWVGYEQFIPIYADASPMGGDNVNDPGIIVTQSVHKLLAAF 245 Query: 236 --SSGALVGSNKIIYDYLINYAKPFIYTTSPS-PILA 269 +S + I+ N A +TSP PI+A Sbjct: 246 SQASQIHKKDSHIVNHKRFNEAFMMHTSTSPFYPIVA 282 >gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.. Length = 369 Score = 37.6 bits (88), Expect = 0.006 Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 34/183 (18%) Query: 77 HLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIV---------YDKLVHASI 127 LE++ A G E L F SG AA +L L +A D +V Y Sbjct: 42 VDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLP 101 Query: 128 REGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVK 187 + GI + ++ + I K + VES + ++ + + Sbjct: 102 KLGIEVTF-----VDPDDPEALEAAIKPETKL-------VYVESPTNPTLKVVDIEAIAE 149 Query: 188 IANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGS-----SGALVG 242 +A+++ +VVD AT L + L + IV+HS +K +G +G +VG Sbjct: 150 LAHEHGALLVVDNTFATPY---LQRPLELGAD-----IVVHSATKYIGGHSDVIAGVVVG 201 Query: 243 SNK 245 S + Sbjct: 202 SGE 204 >gnl|CDD|144581 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase family. The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC, and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin. Length = 363 Score = 36.8 bits (86), Expect = 0.011 Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 37/158 (23%) Query: 64 SGGSRLLCGNYNQHLELEEEAADFFGFEKMLYFGSGYAANMAILSTLP--QATDLIVYDK 121 G G + E E+E A + G + + SG AA L L ++IV Sbjct: 16 RSGWLTTGGPEVR--EFEKEFAAYLGVKHAVAVSSGTAALHLALRALGIGPGDEVIVPSF 73 Query: 122 LVHASIREGINSGKAQAI----AIP---------HN-NINSFAENINKWRKSGGKGFPWI 167 A+ A A+ A P +N + + I K+ I Sbjct: 74 TFVAT---------ANAVLYLGAKPVFVDIDPDTYNIDPAAIEAAITPRTKA-------I 117 Query: 168 VVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATG 205 + +Y G A +D + IA ++ ++ D AHA G Sbjct: 118 MPVHLY---GQPADMDAIRAIAAEHGLPVIEDAAHAHG 152 >gnl|CDD|31300 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]. Length = 382 Score = 35.3 bits (81), Expect = 0.026 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 13/134 (9%) Query: 82 EEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVH-----ASIREGINSGKA 136 E+ A+F G +++ A A++ L + D +V D L H A+ R G+N + Sbjct: 68 EDLAEFLGMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEV 127 Query: 137 QAIAIPHNNIN--SFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDD---LVKIAND 191 P I +AE I + + GG + + +DG+ L D + KI + Sbjct: 128 PNTGYPEYKITPEGYAEVIEEVKDEGGD---PPALALLTHVDGEYGNLADAKKVAKICRE 184 Query: 192 YDGFIVVDEAHATG 205 Y ++++ A+ G Sbjct: 185 YGVPLLLNCAYTVG 198 >gnl|CDD|35852 KOG0633, KOG0633, KOG0633, Histidinol phosphate aminotransferase [Amino acid transport and metabolism]. Length = 375 Score = 32.7 bits (74), Expect = 0.17 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 8/101 (7%) Query: 176 DGDKAPLDDLVKIANDYD-GFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKAL 234 G DD++KI D G +VVDEA+ G + ++++ N+IV+ + SK+ Sbjct: 173 TGSIIKEDDILKILEMPDNGLVVVDEAYID-FSGVESR--MKLVKKYPNLIVLQTLSKSF 229 Query: 235 GSSGALVG---SNKIIYDYLINYAKPFIYTTSPSPILAVVA 272 G +G VG I + L N AK + + A+ A Sbjct: 230 GLAGIRVGYGAFPLSIAEIL-NRAKAPYNISVAGSVAALAA 269 >gnl|CDD|35276 KOG0053, KOG0053, KOG0053, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]. Length = 409 Score = 32.5 bits (74), Expect = 0.21 Identities = 37/193 (19%), Positives = 72/193 (37%), Gaps = 20/193 (10%) Query: 79 ELEEEAADFFGFEKMLYFGSG-YAANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQ 137 LE A G L F SG A +A+L LP ++ + ++R Sbjct: 81 VLESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKF 140 Query: 138 AIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIV 197 +++ ++ K K+ + + +ES + ++ L ++A+ Y +V Sbjct: 141 GGEGDFVDVD----DLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVV 196 Query: 198 VDEAHATGV-CGPLGKGLTHIIEERNNVIVMHSCSKALGS-----SGALVGSNKIIYDYL 251 VD + PL G IV+HS +K +G G++V +++ + L Sbjct: 197 VDNTFGSPYNQDPLPLGAD---------IVVHSATKYIGGHSDVIGGSVVLNSEELASRL 247 Query: 252 INYAKPFIYTTSP 264 + + P Sbjct: 248 KFLQEDLGWCEDP 260 >gnl|CDD|36762 KOG1549, KOG1549, KOG1549, Cysteine desulfurase NFS1 [Amino acid transport and metabolism]. Length = 428 Score = 30.7 bits (69), Expect = 0.71 Identities = 10/39 (25%), Positives = 19/39 (48%) Query: 167 IVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATG 205 + + + + G P+ ++VKI + + VD A A G Sbjct: 185 VSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVG 223 >gnl|CDD|30866 COG0520, CsdB, Selenocysteine lyase [Amino acid transport and metabolism]. Length = 405 Score = 30.7 bits (69), Expect = 0.75 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%) Query: 79 ELEEEAADFFGFEKM--LYFGSG--YAANMAI--LSTLPQATDLIVYDKLVHASI----R 128 E A F + + F G A N+ L + D IV L H S + Sbjct: 70 AAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQ 129 Query: 129 EGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKI 188 E A+ IP ++ + K + + + ++ G P+ ++ ++ Sbjct: 130 ELAKRTGAKVRVIPLDDDGLLDLDA--LEKLITPKTKLVALSHVSNVTGTVNPVKEIAEL 187 Query: 189 ANDYDGFIVVDEAHATG 205 A+++ ++VD A A G Sbjct: 188 AHEHGALVLVDAAQAAG 204 >gnl|CDD|31362 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]. Length = 388 Score = 29.8 bits (67), Expect = 1.2 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 14/76 (18%) Query: 183 DDLVKIAN---DYDGFIVVDEAHATGVCGPLGKGLTHI------IEERNNVIVMHSCSKA 233 ++L KIA + ++ DE HA V G HI +N I + S SK Sbjct: 178 EELRKIAELCLRHGVRVISDEIHADLVL----GGHKHIPFASLSERFADNSITLTSASKT 233 Query: 234 LGSSGALVGSNKIIYD 249 +G L + II + Sbjct: 234 FNLAG-LKCAYIIISN 248 >gnl|CDD|30841 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 814 Score = 29.5 bits (66), Expect = 1.5 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 18/94 (19%) Query: 90 FEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIA--IPHNNIN 147 FE F + AA M +L+ L + D+ V E + +A PH Sbjct: 671 FEARQTFNTAIAALMELLNALRKYLRRTEGDRKVLREALETW----VRLLAPFAPH---- 722 Query: 148 SFAENINKWRKSGGKGF----PW-IVVESIYSMD 176 AE + W + G +GF PW E D Sbjct: 723 -IAEEL--WEELGNEGFVSNAPWPEPDEEALVED 753 >gnl|CDD|146992 pfam04615, Utp14, Utp14 protein. This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 731 Score = 29.3 bits (66), Expect = 2.1 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 5/26 (19%) Query: 8 FYEE----RLQKIKSKGRHRQLLRRQ 29 F EE R++KIKSK HR + +++ Sbjct: 218 FREEAKAKRIKKIKSKKYHR-VHKKE 242 >gnl|CDD|34648 COG5043, MRS6, Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]. Length = 2552 Score = 27.7 bits (61), Expect = 5.5 Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 17/92 (18%) Query: 307 SSQSHIQSIVIGDNKSCLNIAKNLQKKGFDI--------------RAIRPPTVPINTARL 352 I+ +N + A + VP+ ARL Sbjct: 800 PPFFDIKDNFQIENHANEQTAAKFHAQQIFAFYFKVDYFICSGLDSRSENYLVPVLRARL 859 Query: 353 RISITLNVDEPTI---VKLFDILPQIISEGNS 381 L + + DI+ + + +S Sbjct: 860 EFYFDLVARKFNLRVTSNSNDIVDKEFTYPSS 891 >gnl|CDD|33125 COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]. Length = 215 Score = 27.3 bits (60), Expect = 7.1 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 13/83 (15%) Query: 114 TDLIVYDKLVHASIREGINSGKAQAIAIPHNNINSFAENIN---KWRKSGGKGFPWIV-- 168 + V DK S + ++ +N+ E + K R K F + Sbjct: 127 PRVFVTDKA--PSYTAALRKLGSEVEHRTSKYLNNRIEQDHRPIKRRTRPMKRFKSLSSA 184 Query: 169 ------VESIYSMDGDKAPLDDL 185 +ESI+ + + L L Sbjct: 185 ASTISGIESIHMLYKRQRSLQAL 207 >gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.. Length = 338 Score = 27.3 bits (61), Expect = 7.7 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%) Query: 79 ELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIRE----GINSG 134 +LE AA+ FG E L+ SG AAN L+ Q ++ + H E SG Sbjct: 36 KLEARAAELFGKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFLSG 95 Query: 135 KAQAIAIPHNN 145 + + +P N Sbjct: 96 -VKLLPVPGEN 105 >gnl|CDD|32703 COG2876, AroA, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]. Length = 286 Score = 26.8 bits (59), Expect = 9.0 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 77 HLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREGINS 133 +E E AD +L G+ N A+L + + ++ + + A+I E +N+ Sbjct: 121 DVEAAAEYAD------ILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNA 171 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.136 0.393 Gapped Lambda K H 0.267 0.0759 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,570,697 Number of extensions: 242467 Number of successful extensions: 672 Number of sequences better than 10.0: 1 Number of HSP's gapped: 641 Number of HSP's successfully gapped: 44 Length of query: 381 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 285 Effective length of database: 4,189,273 Effective search space: 1193942805 Effective search space used: 1193942805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.1 bits)