RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate
synthase [Candidatus Liberibacter asiaticus str. psy62]
         (381 letters)



>gnl|CDD|30505 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
           enzymes [Coenzyme metabolism].
          Length = 388

 Score =  344 bits (883), Expect = 3e-95
 Identities = 143/387 (36%), Positives = 219/387 (56%), Gaps = 20/387 (5%)

Query: 6   MSFYEERLQKIKSKGRHRQLLRR------------QDIWDFTSHDYLALSSSTLLREKIL 53
           +SF  + LQ +K++G +R L               + + +F S+DYL L+S   L E   
Sbjct: 4   LSFLRQALQALKAEGLYRGLRALDRRQGLAIRADGRKVLNFCSNDYLGLASHPELIEAAK 63

Query: 54  SSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQA 113
           +++  +  +G+GGSRL+ G  + H+ELEEE ADF G E  L F SG+ AN+ +LS L + 
Sbjct: 64  AAIR-RYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKK 122

Query: 114 TDLIVYDKLVHASIREGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIY 173
            DLI  D+L HASI +GI   +A+     HN+++     + + R   G     IV E ++
Sbjct: 123 GDLIFSDELNHASIIDGIRLSRAEVRRFKHNDLDHLEALLEEAR-ENGARRKLIVTEGVF 181

Query: 174 SMDGDKAPLDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHI--IEERNNVIVMHSCS 231
           SMDGD APL +LV++A  Y   + VDEAHA GV GP G+GL     +E     I++ +  
Sbjct: 182 SMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLG 241

Query: 232 KALGSSGALVGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQ 291
           KALGSSG  +  +  + DYL N A+PFI++T+  P +A  A  AL++++  P   + L +
Sbjct: 242 KALGSSGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQE 301

Query: 292 LINITDKIANKKIGF---SSQSHIQSIVIGDNKSCLNIAKNLQKKGFDIRAIRPPTVPIN 348
           L      +  K +G     S+S I  +++GD +  L  ++ L ++G  + AIRPPTVP  
Sbjct: 302 LAAFFRSLL-KALGLVLLPSESPIIPVILGDEERALEASRALLEEGIYVSAIRPPTVPKG 360

Query: 349 TARLRISITLNVDEPTIVKLFDILPQI 375
           TARLRI++T    E  I +L + L ++
Sbjct: 361 TARLRITLTAAHTEEDIDRLAEALSEV 387


>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
           phosphate (PLP)-dependent aspartate aminotransferase
           superfamily (fold I). The major groups in this CD
           corresponds to serine palmitoyltransferase (SPT),
           5-aminolevulinate synthase (ALAS),
           8-amino-7-oxononanoate synthase (AONS), and
           2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
           responsible for the condensation of L-serine with
           palmitoyl-CoA to produce 3-ketodihydrospingosine, the
           reaction of the first step in sphingolipid biosynthesis.
           ALAS is involved in heme biosynthesis; it catalyzes the
           synthesis of 5-aminolevulinic acid from glycine and
           succinyl-coenzyme A. AONS catalyses the decarboxylative
           condensation of l-alanine and pimeloyl-CoA in the first
           committed step of biotin biosynthesis. KBL catalyzes the
           second reaction step of the metabolic degradation
           pathway for threonine converting 2-amino-3-ketobutyrate,
           to glycine and acetyl-CoA. The members of this CD are
           widely found in all three forms of life..
          Length = 349

 Score =  307 bits (788), Expect = 4e-84
 Identities = 136/352 (38%), Positives = 203/352 (57%), Gaps = 9/352 (2%)

Query: 29  QDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFF 88
           + + +F S+DYL L++   + E    +LD K  +G+GGSRL+ G  + H ELEEE A+F 
Sbjct: 1   KKVLNFCSNDYLGLANHPEVIEAAKEALD-KYGVGAGGSRLISGTSDLHEELEEELAEFH 59

Query: 89  GFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAIPHNNINS 148
           G E  L F SGYAAN  +LSTL    DLI+ D L HASI +GI    A+     HN++  
Sbjct: 60  GKEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMED 119

Query: 149 FAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATGVCG 208
             + + + R+  GK    IV E +YSMDGD APL +LV +A  Y   + VDEAH+ GV G
Sbjct: 120 LEKLLREARRPYGKK--LIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYG 177

Query: 209 PLGKGLTHIIEERNNV-IVMHSCSKALGSSGALVGSNKIIYDYLINYAKPFIYTTSPSPI 267
           P G+G+       ++V I+M +  KA G+ G  +  +K + DYL +YA+ FI++TS  P 
Sbjct: 178 PHGRGVEEFGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIFSTSLPPA 237

Query: 268 LAVVACEALKLIKRKPALHKSLLQLINITDKIANKKIGF---SSQSHIQSIVIGD-NKSC 323
           +A  A  AL++++  P   + L + +    +   K++GF    S SHI   +IGD     
Sbjct: 238 VAAAALAALEVLQGGPERRERLQENVRYL-RRGLKELGFPVGGSPSHIIPPLIGDDPAKA 296

Query: 324 LNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFDILPQI 375
           +  +  L ++G  ++AIR PTVP  TARLRIS++    +  I +L + L ++
Sbjct: 297 VAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348


>gnl|CDD|36573 KOG1359, KOG1359, KOG1359, Glycine
           C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase
           [Amino acid transport and metabolism].
          Length = 417

 Score =  161 bits (409), Expect = 3e-40
 Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 20/347 (5%)

Query: 16  IKSKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYN 75
           I+ KG  +++L      +F +++YL LSS   +      +L+ +   G    R +CG  +
Sbjct: 60  IQVKGSDKKIL------NFCANNYLGLSSHPEIINAGQKALE-EYGAGLSSVRFICGTQD 112

Query: 76  QHLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREGINSGK 135
            H  LE + A F G E  + + S + AN      +    D +  D+L HASI +GI   K
Sbjct: 113 IHKLLESKIAQFHGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLCK 172

Query: 136 AQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGF 195
                  H ++      +    K        +V + ++SMDGD APL+++ ++A  Y   
Sbjct: 173 RYR----HVDVFDLEHCLISACKMR---LKLVVTDGVFSMDGDIAPLEEISQLAKKYGAL 225

Query: 196 IVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSC-SKALG-SSGALVGSNKIIYDYLIN 253
           + +DE HATG  G  G+G         +V +++S   KALG +SG      K +   L  
Sbjct: 226 LFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLLRQ 285

Query: 254 YAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQLINITDKIANKKIGF--SSQSH 311
            ++P++++ S  P +  +A +A  L+       +S  Q      +   +  GF  S  SH
Sbjct: 286 RSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQS-RQANTQRFREFMEAAGFTISGASH 344

Query: 312 -IQSIVIGDNKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISIT 357
            I  +++GD +    +A  L K+G  +     P VP   AR+R+ I+
Sbjct: 345 PICPVMLGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQIS 391


>gnl|CDD|36574 KOG1360, KOG1360, KOG1360, 5-aminolevulinate synthase [Coenzyme
           transport and metabolism].
          Length = 570

 Score =  156 bits (395), Expect = 1e-38
 Identities = 108/383 (28%), Positives = 178/383 (46%), Gaps = 44/383 (11%)

Query: 8   FYEERLQKIKSKGRHR---QLLRRQDIWDFT---------------SHDYLALSSSTLLR 49
           F+ E + K K    +R    + R    +                  S+DYL +S    + 
Sbjct: 132 FFREEIDKKKRDHSYRVFKNVNRLAKEFPLAHRYSEATEKKVTVWCSNDYLGMSRHPEVL 191

Query: 50  EKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFGFEKMLYFGSGYAANMAILST 109
           + +  +LD +   G+GG+R + G+   H+ LE E AD    E  L F S + AN + L T
Sbjct: 192 DAMHDTLD-RHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFT 250

Query: 110 LPQAT-DLIVY-DKLVHASIREGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWI 167
           L +      ++ D+  HAS+ +GI + +       HN+++   + +    KS     P I
Sbjct: 251 LAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRHNDLDHLEQLLQSSPKS----VPKI 306

Query: 168 VV-ESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNV-- 224
           V  E+++SMDG   PL++L  +A+ Y     +DE HA G+ GP G G    + ER+ V  
Sbjct: 307 VAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAG----VGERDGVMH 362

Query: 225 ---IVMHSCSKALGSSGALVGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKR 281
              I+  +  KA G  G  + + + + D + +YA  FI+TTS  P++   A EA++++K 
Sbjct: 363 KVDIISGTLGKAFGCVGGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKS 422

Query: 282 KPALHKSLLQLINITD-KIANKKIGF---SSQSHIQSIVIGD---NKSCLNIAKNLQKKG 334
           +           N+   K    ++G     + SHI  + +GD    K   +I   + K  
Sbjct: 423 EEGRVLRRQHQRNVKYVKQLLMELGIPVIPNPSHIIPVRVGDAALAKQASDIL--ISKHN 480

Query: 335 FDIRAIRPPTVPINTARLRISIT 357
             ++AI  PTV   T RLRI+ T
Sbjct: 481 IYVQAINYPTVARGTERLRIAPT 503


>gnl|CDD|36571 KOG1357, KOG1357, KOG1357, Serine palmitoyltransferase
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 519

 Score =  140 bits (354), Expect = 7e-34
 Identities = 90/373 (24%), Positives = 166/373 (44%), Gaps = 37/373 (9%)

Query: 33  DFTSHDYLALSSST-LLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFGFE 91
           +  S++YL  + S     E  L S D K  +    SR   G   +H ELEE  A F G E
Sbjct: 140 NLGSYNYLGFAQSVGPCAEASLKSFD-KYGLSRCSSRHEAGTTEEHKELEELVARFLGVE 198

Query: 92  KMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAIPHNNINSFAE 151
             + F  G+A N   + +L     LI+ D+L HAS+  G     A      HN++    E
Sbjct: 199 DAIVFSMGFATNSMNIPSLLGKGSLIISDELNHASLITGARLSGATTRVFRHNDMQGL-E 257

Query: 152 NINKWRKSGG---KGFPW----IVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHAT 204
            + +     G      PW    I VE IYSM+G    L ++V +   Y  ++ +DEAH+ 
Sbjct: 258 RLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSI 317

Query: 205 GVCGPLGKGLTHI--IEERNNVIVMHSCSKALGSSGALVGSNKIIYDYLINYAKPFIYTT 262
           G  G  G+G+     ++  +  I+M + +K+ G++G  +  +K + DYL   +   +Y T
Sbjct: 318 GAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAGGYIAGSKELIDYLRTPSPSALYAT 377

Query: 263 SPSPILAVVACEALKLIKRKPALHKSLLQLINITD-----KIANKKIGFSSQSHIQSIVI 317
           S SP +A     ++K I  +   ++   ++  + +     +   +K+GF        IV 
Sbjct: 378 SLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGF--------IVY 429

Query: 318 GDNKS------------CLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTI 365
           G+N S             +  ++ + ++   +  +  P  P+  +R R  ++ +  +  +
Sbjct: 430 GNNDSPVVPLLLYGPAKIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDL 489

Query: 366 VKLFDILPQIISE 378
            +  +++ ++  E
Sbjct: 490 DRALEVIDRVGDE 502


>gnl|CDD|143923 pfam00155, Aminotran_1_2, Aminotransferase class I and II. 
          Length = 351

 Score =  132 bits (335), Expect = 1e-31
 Identities = 78/329 (23%), Positives = 131/329 (39%), Gaps = 35/329 (10%)

Query: 62  IGSGGSRLLCGNYNQHLELEEEAADFFGFEKMLY--------FGSGYAANMAILSTLPQA 113
             +GG+R L G  +   EL E  A F G   +L         FGSG  AN   +  L   
Sbjct: 26  ALAGGTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAAVVFGSGAGAN---IEALIFL 82

Query: 114 T----DLIVYDKLVHASIREGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVV 169
                D I+     +AS          + +  P  + N F  + +    +  +    ++ 
Sbjct: 83  LANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKEKPKVVLH 142

Query: 170 ESIYSMDGDKAPLDDLVKIA---NDYDGFIVVDEAHATGVCGPLGKGLTHI-IEERNNVI 225
           ES ++  G  APL++L K+     +++  ++VDEA+A  V G      T   + E  N++
Sbjct: 143 ESPHNPTGTVAPLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEGPNLL 202

Query: 226 VMHSCSKALGSSGALVG---SNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRK 282
           V+ S SKA G +G  VG    N  +   L   A+PF  +T      A    + L      
Sbjct: 203 VVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYSSTHLQAAAAAALSDPL---LVA 259

Query: 283 PALHKSLLQLINITDKIAN--KKIGFS---SQSHIQSIVIGDNKSCLNIAKNLQK-KGFD 336
             L +   ++    D + +  +  G S   SQ+    +   D ++   +A+ L +  G  
Sbjct: 260 SELEEMRQRIKERRDYLRDGLEAAGLSVLPSQAGFFLLTGLDPETAKELAQVLLEEVGVY 319

Query: 337 IRAIRPPTVPINTARLRISITLNVDEPTI 365
           +     P VP     LRI++     E  +
Sbjct: 320 VTPGSSPGVP---GWLRITVA-GGTEEEL 344


>gnl|CDD|36572 KOG1358, KOG1358, KOG1358, Serine palmitoyltransferase
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 467

 Score =  124 bits (312), Expect = 4e-29
 Identities = 77/310 (24%), Positives = 145/310 (46%), Gaps = 9/310 (2%)

Query: 16  IKSKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYN 75
           ++S       +  +D+ +F S ++L L  +  ++E+   +L  K  +GS G R   G  +
Sbjct: 81  LESVMLPHVTIDGKDVLNFASANFLGLIENEEIKEEASFTL-RKYGVGSCGPRGFYGTID 139

Query: 76  QHLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREGINSGK 135
            HL+LE+  A F G E  + +  G++   + +    +  D+I  D+ V+ +I++G+   +
Sbjct: 140 VHLDLEKRIAKFMGTEDAIVYSYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSR 199

Query: 136 AQAIAIPHNNINSFA----ENINKWRKSGGKGFP--WIVVESIYSMDGDKAPLDDLVKIA 189
           +      HN++        E  ++ +K+  K     +IVVE +Y+  GD  PL ++VK+ 
Sbjct: 200 STISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLK 259

Query: 190 NDYDGFIVVDEAHATGVCGPLGKGLT-HIIEERNNV-IVMHSCSKALGSSGALVGSNKII 247
           N Y   +++DE+ + GV G  G+G+T H      ++ IV  S   AL S G        I
Sbjct: 260 NKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGGGFCAGKSFI 319

Query: 248 YDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQLINITDKIANKKIGFS 307
            D+       + ++ S  P LA  A +A+ + +  P + + L   +       +   GF 
Sbjct: 320 ADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSNSGFI 379

Query: 308 SQSHIQSIVI 317
                +S +I
Sbjct: 380 VSGSPESPII 389


>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
           type I) of pyridoxal phosphate (PLP)-dependent enzymes.
           PLP combines with an alpha-amino acid to form a compound
           called a Schiff base or aldimine intermediate, which
           depending on the reaction, is the substrate in four
           kinds of reactions (1) transamination (movement of amino
           groups), (2) racemization (redistribution of
           enantiomers), (3) decarboxylation (removing COOH
           groups), and (4) various side-chain reactions depending
           on the enzyme involved. Pyridoxal phosphate (PLP)
           dependent enzymes were previously classified into alpha,
           beta and gamma classes, based on the chemical
           characteristics (carbon atom involved) of the reaction
           they catalyzed. The availability of several structures
           allowed a comprehensive analysis of  the evolutionary
           classification of PLP dependent enzymes, and it was
           found that the functional classification did not always
           agree with the evolutionary history of these enzymes.
           Structure and sequence analysis has revealed that the
           PLP dependent enzymes can be classified into four major
           groups of different evolutionary origin: aspartate
           aminotransferase superfamily (fold type I), tryptophan
           synthase beta superfamily (fold type II), alanine
           racemase superfamily (fold type III), and D-amino acid
           superfamily (fold type IV) and Glycogen phophorylase
           family (fold type V)..
          Length = 170

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 8/167 (4%)

Query: 77  HLELEEEAADFF--GFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIRE-GINS 133
             ELEE+ A     G +K ++  SG  AN A L  L    D ++ D   H S        
Sbjct: 2   LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAEL 61

Query: 134 GKAQAIAIPHNNINSFAENINKWRKSGGKGFP-WIVVESIYSMDGDKAPLDDLVKIANDY 192
             A+ + +P ++      ++    +   K     IV+    +  G   PL ++ KIA +Y
Sbjct: 62  AGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEY 121

Query: 193 DGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGSSGA 239
              ++VD A A G           I E   +V+   S  K LG  G 
Sbjct: 122 GILLLVDAASAGGA---SPAPGVLIPEGGADVVTF-SLHKNLGGEGG 164


>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
           belongs to pyridoxal phosphate (PLP)-dependent aspartate
           aminotransferase superfamily (fold I). Pyridoxal
           phosphate combines with an alpha-amino acid to form a
           compound called a Schiff base or aldimine intermediate,
           which depending on the reaction, is the substrate in
           four kinds of reactions (1) transamination (movement of
           amino groups), (2) racemization (redistribution of
           enantiomers), (3) decarboxylation (removing COOH
           groups), and (4) various side-chain reactions depending
           on the enzyme involved. Pyridoxal phosphate (PLP)
           dependent enzymes were previously classified into alpha,
           beta and gamma classes, based on the chemical
           characteristics (carbon atom involved) of the reaction
           they catalyzed. The availability of several structures
           allowed a comprehensive analysis of  the evolutionary
           classification of PLP dependent enzymes, and it was
           found that the functional classification did not always
           agree with the evolutionary history of these enzymes.
           The major groups in this CD corresponds to Aspartate
           aminotransferase a, b and c, Tyrosine, Alanine,
           Aromatic-amino-acid, Glutamine phenylpyruvate,
           1-Aminocyclopropane-1-carboxylate synthase,
           Histidinol-phosphate, gene products of malY and cobC,
           Valine-pyruvate aminotransferase and Rhizopine
           catabolism regulatory protein..
          Length = 350

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 14/104 (13%)

Query: 182 LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHII----EERNNVIVMHSCSKALGSS 237
           L++L ++A  +   I+ DEA+A      +  G         +    VIV+ S SK  G  
Sbjct: 154 LEELAELAKKHGILIISDEAYA----ELVYDGEPPPALALLDAYERVIVLRSFSKTFGLP 209

Query: 238 GA----LVGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALK 277
           G     L+   + + +  +    P+   + PS +    A  AL 
Sbjct: 210 GLRIGYLIAPPEELLE-RLKKLLPYTT-SGPSTLSQAAAAAALD 251


>gnl|CDD|30428 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
           cobyric acid decarboxylase [Amino acid transport and
           metabolism].
          Length = 356

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 41/211 (19%), Positives = 80/211 (37%), Gaps = 18/211 (8%)

Query: 176 DGDKAPLDDLVKIAN--DYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKA 233
            G   P ++L  +       G +V+DEA+           L   ++   N+IV+ + SKA
Sbjct: 158 TGTLLPREELRALLEALPEGGLVVIDEAYI-EFSPESSLEL---LKYPPNLIVLRTFSKA 213

Query: 234 LGSSGALVG---SNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLI-KRKPALHKSL 289
            G +G  VG   +N  +   L     PF   +SP+   A+ A      + +    + +  
Sbjct: 214 FGLAGLRVGYAIANPELIAALNKVRPPF-NVSSPALAAAIAALRDADYLEESVERIREER 272

Query: 290 LQLINITDKIANKKIGFSSQSHIQSIVIGDNKSCLNIAKNLQKKGFDIRAIRPPTVPINT 349
            +L      +    +  S  + +  +V   +     +A+ L KKG  +R      +    
Sbjct: 273 ERLYAALKALGLFGVFPSQANFV--LVRVPDAEAAALAEALLKKGILVRDCSSVGLLPG- 329

Query: 350 ARLRISITLNVDEPTIVKLFDILPQIISEGN 380
             LRI++    +     +L   L +++    
Sbjct: 330 -YLRITVGTPEEND---RLLAALREVLKGLG 356


>gnl|CDD|32165 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid
           transport and metabolism].
          Length = 557

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 46/215 (21%), Positives = 74/215 (34%), Gaps = 34/215 (15%)

Query: 77  HLELEEEAADFFGFEKMLYFGSGY-AANMAILSTLPQATDLIVYDKLVHASIREGINSGK 135
             E +E AA  FG +   +  +G   AN A+++ +    D ++ D+  H SI  G+    
Sbjct: 72  IKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGL---- 127

Query: 136 AQAIAIPHNNINSFAENIN--------------KWRKSGGKGFPWIVVESIYSMDGDKAP 181
             A A P     S                           K    ++    Y  DG    
Sbjct: 128 ILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLA--VITNPTY--DGVCYN 183

Query: 182 LDDLVKIANDYDGFIVVDEAHAT--GVCGPLGKGLTHIIEERNNVIVMHSCSKALGS--- 236
           L  +V++ + Y  +++ DEAH         L +             V  S  K L +   
Sbjct: 184 LRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPES----ALNGGADFVTQSTHKLLAALSQ 239

Query: 237 -SGALVGSNKIIYDYLINYAKPFIYTTSPS-PILA 269
            S   V   + +     N A     +TSPS P++A
Sbjct: 240 ASMIHVKDGRAVNHERFNEALMMHQSTSPSYPLMA 274


>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
           belongs to pyridoxal phosphate (PLP)-dependent aspartate
           aminotransferase superfamily (fold I). The major groups
           in this CD corresponds to ornithine decarboxylase (ODC),
           arginine decarboxylase (ADC) and lysine decarboxylase
           (LDC). ODC is a dodecamer composed of six homodimers and
           catalyzes the decarboxylation of tryptophan. ADC
           catalyzes the decarboxylation of arginine and LDC
           catalyzes the decarboxylation of lysine. Members of this
           family are widely found in all three forms of life..
          Length = 294

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 47/210 (22%), Positives = 72/210 (34%), Gaps = 26/210 (12%)

Query: 77  HLELEEEAADFFGFEKMLYF----GSGYAANMAILSTLPQATDLIVYDKLVHASIREGIN 132
             E +E AA  FG +    F    G+  +    IL+      D I+ D+  H S+  G+ 
Sbjct: 61  IKEAQELAARAFGAKH--TFFLVNGTSSSNKAVILAVCG-PGDKILIDRNCHKSVINGLV 117

Query: 133 SGKAQAIAIPHNNINSF--------AENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDD 184
              A  + +     N +         E   K           ++    Y   G    L  
Sbjct: 118 LSGAVPVYL-KPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTY--YGICYNLRK 174

Query: 185 LVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGS----SGAL 240
           +V+ A+     ++VDEAH  G        L          IV+ S  K L +    S   
Sbjct: 175 IVEEAHHRGLPVLVDEAH--GAHFRFHPILPSSAAMAGADIVVQSTHKTLPALTQGSMIH 232

Query: 241 VGSNKIIYDYLINYAKPFIYTTSPS-PILA 269
           V  + +  D +         +TSPS  ILA
Sbjct: 233 VKGDLVNPDRVNEALNLHQ-STSPSYLILA 261


>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
           family belongs to pyridoxal phosphate (PLP)-dependent
           aspartate aminotransferase superfamily (fold I). The
           major groups in this CD correspond to ornithine
           aminotransferase, acetylornithine aminotransferase,
           alanine-glyoxylate aminotransferase, dialkylglycine
           decarboxylase, 4-aminobutyrate aminotransferase,
           beta-alanine-pyruvate aminotransferase,
           adenosylmethionine-8-amino-7-oxononanoate
           aminotransferase, and glutamate-1-semialdehyde
           2,1-aminomutase. All the enzymes belonging to this
           family act on basic amino acids and their derivatives
           are involved in transamination or decarboxylation..
          Length = 413

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 22/127 (17%)

Query: 167 IVVESIYSMDGDKAP----LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERN 222
           ++VE I    G   P    L  L ++   +   ++ DE   TG  G  GK       E  
Sbjct: 195 VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEV-QTG-FGRTGKMFAF---EHF 249

Query: 223 NV---IVMHSCSKALGSS---GALVGSNKIIYDYLINYAKPFIY--TTSPSPILAVVACE 274
            V   IV  +  K LG     GA++G  +I        A P ++  T   +P+    A  
Sbjct: 250 GVEPDIV--TLGKGLGGGLPLGAVLGREEI---MDAFPAGPGLHGGTFGGNPLACAAALA 304

Query: 275 ALKLIKR 281
            L++++ 
Sbjct: 305 VLEVLEE 311


>gnl|CDD|30971 COG0626, MetC, Cystathionine beta-lyases/cystathionine
           gamma-synthases [Amino acid transport and metabolism].
          Length = 396

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 18/186 (9%)

Query: 72  GNYNQHLELEEEAADFFGFEKMLYFGSGYAA-NMAILSTLPQATDLIVYDKLVHASIREG 130
           GN      LEE  A+  G E    F SG AA + A+L+ L     +++ D L   + R  
Sbjct: 61  GNPT-RDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLF 119

Query: 131 INSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIAN 190
               +   + +   +           ++   K    + +E+  +   +   +  + ++A 
Sbjct: 120 EKILQKFGVEVTFVDPGDDEALEAAIKEPNTKL---VFLETPSNPLLEVPDIPAIARLAK 176

Query: 191 DYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGS-----SGALVGSNK 245
            Y   +VVD   AT V   L + L    +     IV+HS +K LG       G ++  N+
Sbjct: 177 AYGALVVVDNTFATPV---LQRPLELGAD-----IVVHSATKYLGGHSDVLGGVVLTPNE 228

Query: 246 IIYDYL 251
            +Y+ L
Sbjct: 229 ELYELL 234


>gnl|CDD|32700 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid
           transport and metabolism].
          Length = 426

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 31/173 (17%)

Query: 80  LEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIV---------YDKLVHASIREG 130
           LEE  A   G    L   SG AA    +  L  A D IV         Y+   H   R G
Sbjct: 67  LEERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLG 126

Query: 131 INSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIAN 190
           I     +   +  ++  +F   I++  K+       +  E+I +   D   ++ + +IA+
Sbjct: 127 I-----EVRFVDPDDPENFEAAIDENTKA-------VFAETIGNPGLDVLDIEAIAEIAH 174

Query: 191 DYDGFIVVDEAHATGV-CGPLGKGLTHIIEERNNVIVMHSCSKALGSSGALVG 242
            +   ++VD   AT   C P+  G           IV+HS +K +G  G  +G
Sbjct: 175 RHGVPLIVDNTFATPYLCRPIEHGAD---------IVVHSATKYIGGHGTAIG 218


>gnl|CDD|30785 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
           [Amino acid transport and metabolism].
          Length = 393

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 21/192 (10%)

Query: 97  GSGYAANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAIP-HNNINSFAENINK 155
           G+  A  +A L+ L    ++++ D   + S    +     + + +P     N F  ++  
Sbjct: 97  GAKEALFLAFLALLNPGDEVLIPDP-GYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLED 155

Query: 156 WRKSGGKGFPWIVVES-------IYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATGVC- 207
              +       I++ S       +YS    K  L  +V++A ++D  I+ DE +   V  
Sbjct: 156 LEAAITPKTKAIILNSPNNPTGAVYS----KEELKAIVELAREHDIIIISDEIYEELVYD 211

Query: 208 GPLGKGLTHIIEERNNVIVMHSCSKALGSSGA----LVGSNKIIYDYLINYAKPFIYTTS 263
           G     +  +   R+  I ++S SK  G +G     +VG  + +   L        Y TS
Sbjct: 212 GAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKS---YLTS 268

Query: 264 PSPILAVVACEA 275
            +P  A  A  A
Sbjct: 269 CAPTPAQYAAIA 280


>gnl|CDD|32191 COG2008, GLY1, Threonine aldolase [Amino acid transport and
           metabolism].
          Length = 342

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 79  ELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREG----INSG 134
            LE+  A+ FG E  L+  SG  AN   L+   Q  + ++  +  H    E        G
Sbjct: 39  ALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICHETAHIYTDECGAPEFFGG 98

Query: 135 KAQAIAIPHNNINSFAENINKWRKSGGK---GFPWIVVESIYSMDGDKAPLDDLVKIA 189
             +   +P  +     E++    +         P  V+E+  +  G   PLD+L  I+
Sbjct: 99  GQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAIS 156


>gnl|CDD|144709 pfam01212, Beta_elim_lyase, Beta-eliminating lyase. 
          Length = 288

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 20/139 (14%)

Query: 79  ELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREG-----INS 133
            LE+  A+ FG E  L+  SG  AN   L    +  D ++  +  H    E      +  
Sbjct: 36  RLEDRVAELFGKEAALFVPSGTMANQLALMAHCRRGDEVICGEPAHIYFDETGGHAELGG 95

Query: 134 GKAQAIAIPHNN---INSFAENINKWRKSGGKGFPWIVVE--------SIYSMDGDKAPL 182
            +   +         +      I             I +E         + S++     L
Sbjct: 96  AQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEE----L 151

Query: 183 DDLVKIANDYDGFIVVDEA 201
            ++  IA ++   + +D A
Sbjct: 152 REIRAIAREHGIPLHLDGA 170


>gnl|CDD|144757 pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain. 
          Length = 417

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 45/217 (20%), Positives = 75/217 (34%), Gaps = 26/217 (11%)

Query: 77  HLELEEEAADFFGFEKMLYFGSGY-AANMAILSTLPQATDLIVYDKLVHASIREGINSGK 135
             E ++ AA  FG +K  +  +G   AN  +   +    D ++ D+  H SI   +    
Sbjct: 68  IKEAQKYAARVFGADKSYFVVNGTSGANKTVGMAVCTPGDTVLIDRNCHKSIHHALMMSG 127

Query: 136 AQAIAI-PHNN-------INSFAENINKWRK-----SGGKGFPWIVVE-SIYSMDGDKAP 181
           A  + + P  N       I          ++        KG    V+    Y  DG    
Sbjct: 128 ATPVYLEPTRNAYGIIGGIPLHEFQEETIKEALAEVPPAKGPRLAVITNGTY--DGTIYN 185

Query: 182 LDDLVKIANDYDGFIVVDEAH-ATGVCGPLGKGLTHIIEERNN---VIVMHSCSKALG-- 235
             ++V        +I+ D A        P+    + +  +  N   +IV  S  K L   
Sbjct: 186 AKEIVDTLGHLSDYILFDSAWVGYEQFIPIYADASPMGGDNVNDPGIIVTQSVHKLLAAF 245

Query: 236 --SSGALVGSNKIIYDYLINYAKPFIYTTSPS-PILA 269
             +S      + I+     N A     +TSP  PI+A
Sbjct: 246 SQASQIHKKDSHIVNHKRFNEAFMMHTSTSPFYPIVA 282


>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
           dependent enzyme and catalyzes the committed step of
           methionine biosynthesis. This pathway is unique to
           microorganisms and plants, rendering the enzyme an
           attractive target for the development of antimicrobials
           and herbicides. This subgroup also includes
           cystathionine gamma-lyases (CGL), O-acetylhomoserine
           sulfhydrylases and O-acetylhomoserine thiol lyases.
           CGL's are very similar to CGS's. Members of this group
           are widely distributed among all three forms of life..
          Length = 369

 Score = 37.6 bits (88), Expect = 0.006
 Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 34/183 (18%)

Query: 77  HLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIV---------YDKLVHASI 127
              LE++ A   G E  L F SG AA   +L  L +A D +V         Y        
Sbjct: 42  VDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLP 101

Query: 128 REGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVK 187
           + GI         +  ++  +    I    K        + VES  +       ++ + +
Sbjct: 102 KLGIEVTF-----VDPDDPEALEAAIKPETKL-------VYVESPTNPTLKVVDIEAIAE 149

Query: 188 IANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGS-----SGALVG 242
           +A+++   +VVD   AT     L + L    +     IV+HS +K +G      +G +VG
Sbjct: 150 LAHEHGALLVVDNTFATPY---LQRPLELGAD-----IVVHSATKYIGGHSDVIAGVVVG 201

Query: 243 SNK 245
           S +
Sbjct: 202 SGE 204


>gnl|CDD|144581 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase
           family.  The members of this family are probably all
           pyridoxal-phosphate-dependent aminotransferase enzymes
           with a variety of molecular functions. The family
           includes StsA, StsC, and StsS. The aminotransferase
           activity was demonstrated for purified StsC protein as
           the L-glutamine:scyllo-inosose aminotransferase
           EC:2.6.1.50, which catalyses the first amino transfer in
           the biosynthesis of the streptidine subunit of
           streptomycin.
          Length = 363

 Score = 36.8 bits (86), Expect = 0.011
 Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 37/158 (23%)

Query: 64  SGGSRLLCGNYNQHLELEEEAADFFGFEKMLYFGSGYAANMAILSTLP--QATDLIVYDK 121
             G     G   +  E E+E A + G +  +   SG AA    L  L      ++IV   
Sbjct: 16  RSGWLTTGGPEVR--EFEKEFAAYLGVKHAVAVSSGTAALHLALRALGIGPGDEVIVPSF 73

Query: 122 LVHASIREGINSGKAQAI----AIP---------HN-NINSFAENINKWRKSGGKGFPWI 167
              A+         A A+    A P         +N +  +    I    K+       I
Sbjct: 74  TFVAT---------ANAVLYLGAKPVFVDIDPDTYNIDPAAIEAAITPRTKA-------I 117

Query: 168 VVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATG 205
           +   +Y   G  A +D +  IA ++   ++ D AHA G
Sbjct: 118 MPVHLY---GQPADMDAIRAIAAEHGLPVIEDAAHAHG 152


>gnl|CDD|31300 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent
           enzymes [General function prediction only].
          Length = 382

 Score = 35.3 bits (81), Expect = 0.026
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 82  EEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVH-----ASIREGINSGKA 136
           E+ A+F G +++        A  A++  L +  D +V D L H     A+ R G+N  + 
Sbjct: 68  EDLAEFLGMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEV 127

Query: 137 QAIAIPHNNIN--SFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDD---LVKIAND 191
                P   I    +AE I + +  GG       +  +  +DG+   L D   + KI  +
Sbjct: 128 PNTGYPEYKITPEGYAEVIEEVKDEGGD---PPALALLTHVDGEYGNLADAKKVAKICRE 184

Query: 192 YDGFIVVDEAHATG 205
           Y   ++++ A+  G
Sbjct: 185 YGVPLLLNCAYTVG 198


>gnl|CDD|35852 KOG0633, KOG0633, KOG0633, Histidinol phosphate aminotransferase
           [Amino acid transport and metabolism].
          Length = 375

 Score = 32.7 bits (74), Expect = 0.17
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 176 DGDKAPLDDLVKIANDYD-GFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKAL 234
            G     DD++KI    D G +VVDEA+     G   +    ++++  N+IV+ + SK+ 
Sbjct: 173 TGSIIKEDDILKILEMPDNGLVVVDEAYID-FSGVESR--MKLVKKYPNLIVLQTLSKSF 229

Query: 235 GSSGALVG---SNKIIYDYLINYAKPFIYTTSPSPILAVVA 272
           G +G  VG       I + L N AK     +    + A+ A
Sbjct: 230 GLAGIRVGYGAFPLSIAEIL-NRAKAPYNISVAGSVAALAA 269


>gnl|CDD|35276 KOG0053, KOG0053, KOG0053, Cystathionine beta-lyases/cystathionine
           gamma-synthases [Amino acid transport and metabolism].
          Length = 409

 Score = 32.5 bits (74), Expect = 0.21
 Identities = 37/193 (19%), Positives = 72/193 (37%), Gaps = 20/193 (10%)

Query: 79  ELEEEAADFFGFEKMLYFGSG-YAANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQ 137
            LE   A   G    L F SG  A  +A+L  LP    ++    +   ++R         
Sbjct: 81  VLESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKF 140

Query: 138 AIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIV 197
                  +++    ++ K  K+  +    + +ES  +       ++ L ++A+ Y   +V
Sbjct: 141 GGEGDFVDVD----DLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVV 196

Query: 198 VDEAHATGV-CGPLGKGLTHIIEERNNVIVMHSCSKALGS-----SGALVGSNKIIYDYL 251
           VD    +     PL  G           IV+HS +K +G       G++V +++ +   L
Sbjct: 197 VDNTFGSPYNQDPLPLGAD---------IVVHSATKYIGGHSDVIGGSVVLNSEELASRL 247

Query: 252 INYAKPFIYTTSP 264
               +   +   P
Sbjct: 248 KFLQEDLGWCEDP 260


>gnl|CDD|36762 KOG1549, KOG1549, KOG1549, Cysteine desulfurase NFS1 [Amino acid
           transport and metabolism].
          Length = 428

 Score = 30.7 bits (69), Expect = 0.71
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 167 IVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATG 205
           + +  + +  G   P+ ++VKI  +    + VD A A G
Sbjct: 185 VSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVG 223


>gnl|CDD|30866 COG0520, CsdB, Selenocysteine lyase [Amino acid transport and
           metabolism].
          Length = 405

 Score = 30.7 bits (69), Expect = 0.75
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 79  ELEEEAADFFGFEKM--LYFGSG--YAANMAI--LSTLPQATDLIVYDKLVHASI----R 128
              E  A F   +    + F  G   A N+    L    +  D IV   L H S     +
Sbjct: 70  AAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQ 129

Query: 129 EGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKI 188
           E      A+   IP ++      +     K        + +  + ++ G   P+ ++ ++
Sbjct: 130 ELAKRTGAKVRVIPLDDDGLLDLDA--LEKLITPKTKLVALSHVSNVTGTVNPVKEIAEL 187

Query: 189 ANDYDGFIVVDEAHATG 205
           A+++   ++VD A A G
Sbjct: 188 AHEHGALVLVDAAQAAG 204


>gnl|CDD|31362 COG1168, MalY, Bifunctional PLP-dependent enzyme with
           beta-cystathionase and maltose regulon repressor
           activities [Amino acid transport and metabolism].
          Length = 388

 Score = 29.8 bits (67), Expect = 1.2
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 14/76 (18%)

Query: 183 DDLVKIAN---DYDGFIVVDEAHATGVCGPLGKGLTHI------IEERNNVIVMHSCSKA 233
           ++L KIA     +   ++ DE HA  V      G  HI          +N I + S SK 
Sbjct: 178 EELRKIAELCLRHGVRVISDEIHADLVL----GGHKHIPFASLSERFADNSITLTSASKT 233

Query: 234 LGSSGALVGSNKIIYD 249
              +G L  +  II +
Sbjct: 234 FNLAG-LKCAYIIISN 248


>gnl|CDD|30841 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 814

 Score = 29.5 bits (66), Expect = 1.5
 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 18/94 (19%)

Query: 90  FEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIA--IPHNNIN 147
           FE    F +  AA M +L+ L +       D+ V     E       + +A   PH    
Sbjct: 671 FEARQTFNTAIAALMELLNALRKYLRRTEGDRKVLREALETW----VRLLAPFAPH---- 722

Query: 148 SFAENINKWRKSGGKGF----PW-IVVESIYSMD 176
             AE +  W + G +GF    PW    E     D
Sbjct: 723 -IAEEL--WEELGNEGFVSNAPWPEPDEEALVED 753


>gnl|CDD|146992 pfam04615, Utp14, Utp14 protein.  This protein is found to be part
           of a large ribonucleoprotein complex containing the U3
           snoRNA. Depletion of the Utp proteins impedes production
           of the 18S rRNA, indicating that they are part of the
           active pre-rRNA processing complex. This large RNP
           complex has been termed the small subunit (SSU)
           processome.
          Length = 731

 Score = 29.3 bits (66), Expect = 2.1
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 5/26 (19%)

Query: 8   FYEE----RLQKIKSKGRHRQLLRRQ 29
           F EE    R++KIKSK  HR + +++
Sbjct: 218 FREEAKAKRIKKIKSKKYHR-VHKKE 242


>gnl|CDD|34648 COG5043, MRS6, Vacuolar protein sorting-associated protein
           [Intracellular trafficking and secretion].
          Length = 2552

 Score = 27.7 bits (61), Expect = 5.5
 Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 17/92 (18%)

Query: 307 SSQSHIQSIVIGDNKSCLNIAKNLQKKGFDI--------------RAIRPPTVPINTARL 352
                I+     +N +    A     +                         VP+  ARL
Sbjct: 800 PPFFDIKDNFQIENHANEQTAAKFHAQQIFAFYFKVDYFICSGLDSRSENYLVPVLRARL 859

Query: 353 RISITLNVDEPTI---VKLFDILPQIISEGNS 381
                L   +  +       DI+ +  +  +S
Sbjct: 860 EFYFDLVARKFNLRVTSNSNDIVDKEFTYPSS 891


>gnl|CDD|33125 COG3316, COG3316, Transposase and inactivated derivatives [DNA
           replication, recombination, and repair].
          Length = 215

 Score = 27.3 bits (60), Expect = 7.1
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 13/83 (15%)

Query: 114 TDLIVYDKLVHASIREGINSGKAQAIAIPHNNINSFAENIN---KWRKSGGKGFPWIV-- 168
             + V DK    S    +    ++        +N+  E  +   K R    K F  +   
Sbjct: 127 PRVFVTDKA--PSYTAALRKLGSEVEHRTSKYLNNRIEQDHRPIKRRTRPMKRFKSLSSA 184

Query: 169 ------VESIYSMDGDKAPLDDL 185
                 +ESI+ +   +  L  L
Sbjct: 185 ASTISGIESIHMLYKRQRSLQAL 207


>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
           family belongs to pyridoxal phosphate (PLP)-dependent
           aspartate aminotransferase superfamily (fold I).  TA
           catalyzes the conversion of L-threonine or
           L-allo-threonine to glycine and acetaldehyde in a
           secondary glycine biosynthetic pathway..
          Length = 338

 Score = 27.3 bits (61), Expect = 7.7
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 79  ELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIRE----GINSG 134
           +LE  AA+ FG E  L+  SG AAN   L+   Q    ++  +  H    E       SG
Sbjct: 36  KLEARAAELFGKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFLSG 95

Query: 135 KAQAIAIPHNN 145
             + + +P  N
Sbjct: 96  -VKLLPVPGEN 105


>gnl|CDD|32703 COG2876, AroA, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP)
           synthase [Amino acid transport and metabolism].
          Length = 286

 Score = 26.8 bits (59), Expect = 9.0
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 77  HLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYDKLVHASIREGINS 133
            +E   E AD      +L  G+    N A+L  + +    ++  + + A+I E +N+
Sbjct: 121 DVEAAAEYAD------ILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNA 171


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0759    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,570,697
Number of extensions: 242467
Number of successful extensions: 672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 641
Number of HSP's successfully gapped: 44
Length of query: 381
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 285
Effective length of database: 4,189,273
Effective search space: 1193942805
Effective search space used: 1193942805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)