BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate
synthase [Candidatus Liberibacter asiaticus str. psy62]
(381 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 381
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/381 (100%), Positives = 381/381 (100%)
Query: 1 MKNIQMSFYEERLQKIKSKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKI 60
MKNIQMSFYEERLQKIKSKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKI
Sbjct: 1 MKNIQMSFYEERLQKIKSKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKI 60
Query: 61 PIGSGGSRLLCGNYNQHLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYD 120
PIGSGGSRLLCGNYNQHLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYD
Sbjct: 61 PIGSGGSRLLCGNYNQHLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYD 120
Query: 121 KLVHASIREGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKA 180
KLVHASIREGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKA
Sbjct: 121 KLVHASIREGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKA 180
Query: 181 PLDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGSSGAL 240
PLDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGSSGAL
Sbjct: 181 PLDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGSSGAL 240
Query: 241 VGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQLINITDKIA 300
VGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQLINITDKIA
Sbjct: 241 VGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQLINITDKIA 300
Query: 301 NKKIGFSSQSHIQSIVIGDNKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNV 360
NKKIGFSSQSHIQSIVIGDNKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNV
Sbjct: 301 NKKIGFSSQSHIQSIVIGDNKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNV 360
Query: 361 DEPTIVKLFDILPQIISEGNS 381
DEPTIVKLFDILPQIISEGNS
Sbjct: 361 DEPTIVKLFDILPQIISEGNS 381
>gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 401
Score = 161 bits (407), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 178/341 (52%), Gaps = 20/341 (5%)
Query: 27 RRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAAD 86
R+ IW S+DYL + + E + + K IG+GG+R + G H+ LE+E A
Sbjct: 45 RKVTIW--CSNDYLGMGKHPKVIENAQRTFE-KCGIGAGGTRNIAGTNYYHVMLEKELAT 101
Query: 87 FFGFEKMLYFGSGYAANMAILSTLPQATDLIVY--DKLVHASIREGINSGKAQAIAIPHN 144
G + L F SGY AN A + TL D I+ D HASI EGIN + + + HN
Sbjct: 102 LHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHN 161
Query: 145 NINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHAT 204
++ +N+ S K I+ ESIYSMDGD AP+ ++ +A+ Y+ +DE HA
Sbjct: 162 DLEDLEKNLAATDLSIPK---IIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAV 218
Query: 205 GVCGPLGKGLTHIIEERNNV-----IVMHSCSKALGSSGALVGSNKIIYDYLINYAKPFI 259
G+ G G G I ER + I+ + +K G+ G + +++ + D++ ++A FI
Sbjct: 219 GIHGSCGAG----ISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFI 274
Query: 260 YTTSPSPILAVVACEALKLIKRKPALHKSLLQLI-NITDKIANKKI-GFSSQSHIQSIVI 317
++TS P +A + +++ IK+ K L+ + + + NK I ++SHI I++
Sbjct: 275 FSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMV 334
Query: 318 GDNKSCLNIAKNLQKK-GFDIRAIRPPTVPINTARLRISIT 357
GD+ C I+ L K+ G I+ I PTV RLR+++T
Sbjct: 335 GDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLT 375
>gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 383
Score = 31.6 bits (70), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 163 GFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATG 205
G P I V + + G P+ ++ +I +Y G +VVD A G
Sbjct: 144 GIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAG 186
>gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 424
Score = 30.8 bits (68), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 127 IREGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIV 168
+ +GIN A AI I N I S +E +N K+ G+P I+
Sbjct: 320 LHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSII 361
>gi|254780827|ref|YP_003065240.1| pantothenate kinase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 311
Score = 26.9 bits (58), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 20/71 (28%)
Query: 34 FTSHDYLALSS-STLLREKI---LSSLDSKIP----------------IGSGGSRLLCGN 73
FTSH++ S S++L +KI L S DS I I +++ C
Sbjct: 10 FTSHEWAVHSKFSSILSKKISNQLLSFDSPIDSTEIYKIYFPLSHLLLINVNSAKITCHQ 69
Query: 74 YNQHLELEEEA 84
YN+ L L+EE+
Sbjct: 70 YNKFLNLKEES 80
>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1398
Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 248 YDYLINYAKPFIYTTSPS--PILAVVACEALKLIKRKPALHKSLLQ 291
Y + AK F+ P +LA V + + L+ R P+LH+ +Q
Sbjct: 392 YVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQ 437
>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 957
Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 18 SKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQH 77
S + +LRRQ I+D +S + ++ +LLR K + S S + GS +L + H
Sbjct: 766 SPANYFHILRRQ-IYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYH 824
>gi|254781056|ref|YP_003065469.1| phage-related lysozyme [Candidatus Liberibacter asiaticus str.
psy62]
Length = 171
Score = 24.6 bits (52), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 150 AENINKWRKSGGKGFPWIV 168
AE KW K+GGK P +V
Sbjct: 140 AEECKKWTKAGGKVLPGLV 158
>gi|254780918|ref|YP_003065331.1| glycosyl transferase family protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 623
Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 319 DNKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNV 360
D+K+ L + K +QKK ++R I T P N +R+ + TL+
Sbjct: 366 DSKTFLYLQK-IQKKYPNLRVITDNTHPFNYSRINNNATLHA 406
>gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 469
Score = 24.3 bits (51), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 145 NINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFI 196
I +N+N WR GKG +DG+K DL+ ++ G +
Sbjct: 224 EITLLGQNVNAWR---GKG-----------LDGEKCTFSDLLYSLSEIKGLV 261
>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
Length = 509
Score = 22.7 bits (47), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 53 LSSLDSKIPIGSGGSRLLCGN 73
+ ++DS IPIG G L+ G+
Sbjct: 150 IKAIDSLIPIGRGQRELIIGD 170
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,276
Number of Sequences: 1233
Number of extensions: 10977
Number of successful extensions: 36
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 14
length of query: 381
length of database: 328,796
effective HSP length: 75
effective length of query: 306
effective length of database: 236,321
effective search space: 72314226
effective search space used: 72314226
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)