HHsearch alignment for GI: 254780487 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=98.78 E-value=2.1e-06 Score=59.55 Aligned_cols=177 Identities=18% Similarity=0.197 Sum_probs=98.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2999835898747999999999984048612013887380689--99998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK--TIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
T Consensus 102 vImmvGL-QGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q----~~v~~f~~~~~~~Pv~Iak---- 172 (451)
T COG0541 102 VILMVGL-QGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ----VGVPFFGSGTEKDPVEIAK---- 172 (451)
T ss_pred EEEEEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH----CCCCEECCCCCCCHHHHHH----
T ss_conf 8999815-679748689999999997499458985056786899999999986----0985316778899799999----
Q ss_pred CCHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 350788642-232887999227655566767530899999747-944897057765045799999999847990799997
Q gi|254780487|r 82 IIDPATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAF 159 (217)
Q Consensus 82 ~i~~~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIl 159 (217)
T Consensus 173 ---~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G--QdA~~~A~aF~e-~l~itGvIl 246 (451)
T COG0541 173 ---AALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG--QDAVNTAKAFNE-ALGITGVIL 246 (451)
T ss_pred ---HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC--HHHHHHHHHHHH-HCCCCEEEE
T ss_conf ---99999997499889996887330309999999999855398748998764445--678999999866-269864999
Q ss_pred CC-CCCCC--HHHHHHHHCCCCE--EEEECCCCC---CCHHHHH
Q ss_conf 69-77800--5999998619989--999478888---8887999
Q gi|254780487|r 160 IG-DSMPK--VEETIVKIGRIPH--LGRLPKIDP---IDPDVLH 195 (217)
Q Consensus 160 N~-~~~~~--~~~~le~~~~ipv--LG~iP~~~~---~~~~~l~ 195 (217)
T Consensus 247 TKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~a 290 (451)
T COG0541 247 TKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFA 290 (451)
T ss_pred ECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 71467876228885699878985997458873547774958899