HHsearch alignment for GI: 254780487 and conserved domain: COG0541

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=98.78  E-value=2.1e-06  Score=59.55  Aligned_cols=177  Identities=18%  Similarity=0.197  Sum_probs=98.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             2999835898747999999999984048612013887380689--99998557873114430014510347889998502
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK--TIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
T Consensus       102 vImmvGL-QGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q----~~v~~f~~~~~~~Pv~Iak----  172 (451)
T COG0541         102 VILMVGL-QGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ----VGVPFFGSGTEKDPVEIAK----  172 (451)
T ss_pred             EEEEEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH----CCCCEECCCCCCCHHHHHH----
T ss_conf             8999815-679748689999999997499458985056786899999999986----0985316778899799999----


Q ss_pred             CCHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             350788642-232887999227655566767530899999747-944897057765045799999999847990799997
Q gi|254780487|r   82 IIDPATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAF  159 (217)
Q Consensus        82 ~i~~~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIl  159 (217)
T Consensus       173 ---~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G--QdA~~~A~aF~e-~l~itGvIl  246 (451)
T COG0541         173 ---AALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG--QDAVNTAKAFNE-ALGITGVIL  246 (451)
T ss_pred             ---HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC--HHHHHHHHHHHH-HCCCCEEEE
T ss_conf             ---99999997499889996887330309999999999855398748998764445--678999999866-269864999


Q ss_pred             CC-CCCCC--HHHHHHHHCCCCE--EEEECCCCC---CCHHHHH
Q ss_conf             69-77800--5999998619989--999478888---8887999
Q gi|254780487|r  160 IG-DSMPK--VEETIVKIGRIPH--LGRLPKIDP---IDPDVLH  195 (217)
Q Consensus       160 N~-~~~~~--~~~~le~~~~ipv--LG~iP~~~~---~~~~~l~  195 (217)
T Consensus       247 TKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~a  290 (451)
T COG0541         247 TKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFA  290 (451)
T ss_pred             ECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf             71467876228885699878985997458873547774958899