HHsearch alignment for GI: 254780487 and conserved domain: COG1066
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=91.25 E-value=1.1 Score=23.68 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=66.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 299983589874799999999998404861-2013887380689999985578731144300145103478899985023
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK-PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
T Consensus 95 ~iLI-gGdPGIGKSTLLLQva~~lA~~~-~vLYVsG--EES~~QiklRA~RL~~~~~--~l~l~aEt~~e~I~~~l---- 164 (456)
T COG1066 95 VILI-GGDPGIGKSTLLLQVAARLAKRG-KVLYVSG--EESLQQIKLRADRLGLPTN--NLYLLAETNLEDIIAEL---- 164 (456)
T ss_pred EEEE-CCCCCCCHHHHHHHHHHHHHHCC-CEEEEEC--CCCHHHHHHHHHHHCCCCC--CEEEEHHCCHHHHHHHH----
T ss_conf 7997-36898779899999999987059-5799967--7678999999998289964--55774112899999999----
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCC------------CCHHHHHHHHCCCEEEEECC-CCCHH
Q ss_conf 507886422328879992276555667675------------30899999747944897057-76504
Q gi|254780487|r 83 IDPATINPPDINDSIIIEGIGGLLVPLTTE------------YLFIDLIERWQFPIILCART-SLGTI 137 (217)
Q Consensus 83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~------------~~~~dla~~l~~~vILV~~~-~~g~i 137 (217)
T Consensus 165 -------~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~I 225 (456)
T COG1066 165 -------EQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAI 225 (456)
T ss_pred -------HHCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf -------8549978999654123026335799858999999999999998759739999888246632