HHsearch alignment for GI: 254780487 and conserved domain: COG1348
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism].
Probab=98.20 E-value=0.00019 Score=47.35 Aligned_cols=177 Identities=16% Similarity=0.180 Sum_probs=95.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCC----------CCCC--CCCCCCH
Q ss_conf 329998358987479999999999840486120138873806899999855787311----------4430--0145103
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHI----------IPEK--WKLRTPA 70 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~----------~~~~--~~~~~~~ 70 (217)
T Consensus 2 r~iAiYGKG-GIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~ 80 (278)
T COG1348 2 RQIAIYGKG-GIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFG 80 (278)
T ss_pred CEEEEECCC-CCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHEECCCC
T ss_conf 379996278-7673126778999999729817997479876327777478666569999986186445887782120678
Q ss_pred --------HHHHHHHHHHCCCHHHHH---H---HHHHCCEEEEECCC-----CCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf --------478899985023507886---4---22328879992276-----5556676753089999974794489705
Q gi|254780487|r 71 --------SPHLAAEIDGVIIDPATI---N---PPDINDSIIIEGIG-----GLLVPLTTEYLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 71 --------~~~~~~~~~~~~i~~~~~---~---~~~~~D~viIEGag-----g~~~~~~~~~~~~dla~~l~~~vILV~~ 131 (217)
T Consensus 81 gv~CVEsGGPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiReg~--Ad-------eiyIVtS 151 (278)
T COG1348 81 GVKCVESGGPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIREGY--AD-------EIYIVTS 151 (278)
T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCEEEEHHCCC--CC-------EEEEEEC
T ss_conf 53774259989998846511999999999818730128789995357734746000200266--63-------7999956
Q ss_pred CCCCHHHHH---HHHH-HHHHHCCCEEEEEEECCCCCCCHHHHHHH---HCCCCEEEEECCCCCC
Q ss_conf 776504579---9999-99984799079999769778005999998---6199899994788888
Q gi|254780487|r 132 TSLGTINHS---LLSL-ETLRNRNINIIGIAFIGDSMPKVEETIVK---IGRIPHLGRLPKIDPI 189 (217)
Q Consensus 132 ~~~g~i~~~---~l~~-~~~~~~g~~i~GiIlN~~~~~~~~~~le~---~~~ipvLG~iP~~~~~ 189 (217)
T Consensus 152 ge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsR~~~~e~e~v~~fa~~igt~li~~vPr~~iv 216 (278)
T COG1348 152 GEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQLIHFVPRDNIV 216 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHH
T ss_conf 83589999889999999987337963145774577764379999999998488527633512788