HHsearch alignment for GI: 254780487 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.24 E-value=0.002 Score=40.93 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=70.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCC-CCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99983589874799999999998404-86120138873806899999855787311443001451034788999850235
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAY-YWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~-~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
T Consensus 179 ~alVGP-TGVGKTTTiAKLAAr~~l~~g~~kVa---LIT~DTYRIgAvEQLk-tYa~IlgvPv~vv~~~~eL-------- 245 (404)
T PRK06995 179 FALVGP-TGVGKTTTTAKLAARCVMRHGASKVA---LLTTDSYRIGGHEQLR-IYGKILGVPVHAVKDAADL-------- 245 (404)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHHHCCCCEE---EEECCCCCHHHHHHHH-HHHHHCCCEEEEECCHHHH--------
T ss_conf 898668-88763758999999999983898379---9976875478999999-9998759559995999999--------
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH-----HCCCEEEEECCCCCHHHHHH-HHHHHHHHCCCEEEEE
Q ss_conf 07886422328879992276555667675308999997-----47944897057765045799-9999998479907999
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER-----WQFPIILCARTSLGTINHSL-LSLETLRNRNINIIGI 157 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~-----l~~~vILV~~~~~g~i~~~~-l~~~~~~~~g~~i~Gi 157 (217)
T Consensus 246 ~~aL~~-l~~~dlILIDTaGr--s~--rD~~~~e~l~~l~~~~~~~~~~LVLsat~~--~~dl~~i~~~--f~~~~~~~~ 316 (404)
T PRK06995 246 RLALAE-LRNKHIVLIDTVGM--SQ--RDRMVSEQIAMLHGAGAPVQRLLLLNATSH--GDTLNEVVQA--YRGPGLAGC 316 (404)
T ss_pred HHHHHH-HCCCCEEEEECCCC--CC--CCHHHHHHHHHHHHCCCCCEEEEEECCCCC--HHHHHHHHHH--HCCCCCCEE
T ss_conf 999997-08999999809998--97--688899999999735788528999779899--9999999998--446999839
Q ss_pred EECCCCC-CCHHHH--HHHHCCCCEE
Q ss_conf 9769778-005999--9986199899
Q gi|254780487|r 158 AFIGDSM-PKVEET--IVKIGRIPHL 180 (217)
Q Consensus 158 IlN~~~~-~~~~~~--le~~~~ipvL 180 (217)
T Consensus 317 I~TKLDEt~~~G~iln~~~~~~lPls 342 (404)
T PRK06995 317 ILTKLDEAASLGGALDTVIRHKLPLH 342 (404)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 98304067972399999999789859