HHsearch alignment for GI: 254780487 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.68 E-value=0.003 Score=39.82 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=80.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCC----CCCC--EECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 299983589874799999999998404----8612--0138873806899999855787311443001451034788999
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAY----YWKP--IQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAE 77 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~----~~KP--v~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (217)
T Consensus 176 vi~lVGP-TGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~i-------l~vp~~v~~~~~dl~~ 247 (388)
T PRK12723 176 IFILVGP-TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI-------MGIPVKAIESFKDLKE 247 (388)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHH-------HCCCEEEECCHHHHHH
T ss_conf 8999899-8875787999999999986267677379998078758899999999999-------7880698578899999
Q ss_pred HHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH---HH--CCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8502350788642232887999227655566767530899999---74--794489705776504579999999984799
Q gi|254780487|r 78 IDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE---RW--QFPIILCARTSLGTINHSLLSLETLRNRNI 152 (217)
Q Consensus 78 ~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~---~l--~~~vILV~~~~~g~i~~~~l~~~~~~~~g~ 152 (217)
T Consensus 248 --------~l-~~~~~~D~IlIDTAGrs~~---d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d-~~~i~~~f--~~~ 312 (388)
T PRK12723 248 --------EI-TQSKDFDLVLIDTIGKSPK---DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD-IKEIFHQF--SPF 312 (388)
T ss_pred --------HH-HHHCCCCEEEEECCCCCCC---CHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-HHHHHHHH--CCC
T ss_conf --------99-9724999999958998856---899999999999741898459999879899999-99999984--279
Q ss_pred EEEEEEECCC-CCCCHH--HHHHHHCCCCEEEE-----ECC-CCCCCHHHHHHHH
Q ss_conf 0799997697-780059--99998619989999-----478-8888887999999
Q gi|254780487|r 153 NIIGIAFIGD-SMPKVE--ETIVKIGRIPHLGR-----LPK-IDPIDPDVLHQKF 198 (217)
Q Consensus 153 ~i~GiIlN~~-~~~~~~--~~le~~~~ipvLG~-----iP~-~~~~~~~~l~~~~ 198 (217)
T Consensus 313 ~~~~~I~TKlDEt~~~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~i 367 (388)
T PRK12723 313 SYKTVIFTKLDETTCVGNLISLIHEMRKEVSYVTDGQIVPHNISIAEPLTFIKKI 367 (388)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 9984999832278986699999999888869993899683020338999999998