HHsearch alignment for GI: 254780487 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.97 E-value=0.00099 Score=42.80 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=81.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC--CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 32999835898747999999999984048612013--8873806899999855787311443001451034788999850
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS--GMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG 80 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~--G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T Consensus 207 ~VIaLVGv-nGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rl----gVpV~~~~dpa~l~~------ 275 (407)
T PRK12726 207 RIISLIGQ-TGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKL----DVELIVATSPAELEE------ 275 (407)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH----CCEEEEECCHHHHHH------
T ss_conf 08999899-9897899999999999977991799970667788999999999997----964998188899999------
Q ss_pred CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCC--C--EEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 23507886422328879992276555667675308999997479--4--4897057765045799999999847990799
Q gi|254780487|r 81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQF--P--IILCARTSLGTINHSLLSLETLRNRNINIIG 156 (217)
Q Consensus 81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~--~--vILV~~~~~g~i~~~~l~~~~~~~~g~~i~G 156 (217)
T Consensus 276 ---av~~~a~~~~~DvVIIDTAGRl~---~d~~Lm~EL~ki~~vi~P~~~lLV~dag~~~~~v~q---a~~~~~~v~ItG 346 (407)
T PRK12726 276 ---AVQYMTYVNCVDHILIDTVGRNY---LAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMT---ILPKLAEIPIDG 346 (407)
T ss_pred ---HHHHHHHCCCCCEEEEECCCCCC---CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH---HHHHHCCCCCCE
T ss_conf ---99999862899989996999881---349999999998733289669999367566999999---998704799987
Q ss_pred EEECCC-CCCC--HHHHHHHHCCCCEE
Q ss_conf 997697-7800--59999986199899
Q gi|254780487|r 157 IAFIGD-SMPK--VEETIVKIGRIPHL 180 (217)
Q Consensus 157 iIlN~~-~~~~--~~~~le~~~~ipvL 180 (217)
T Consensus 347 iILTKLDgtAKGG~aLSi~~~~~lPI~ 373 (407)
T PRK12726 347 FIITKMDETTRIGDLYTVMQETNLPVL 373 (407)
T ss_pred EEEEECCCCCCCCHHHHHHHHHCCCEE
T ss_conf 999701478985399999999888979