HHsearch alignment for GI: 254780487 and conserved domain: PRK13869
>PRK13869 plasmid-partitioning protein RepA; Provisional.
Probab=94.18 E-value=0.36 Score=26.77 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=26.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 32999835898747999999999984048612
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKP 34 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP 34 (217)
T Consensus 122 kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RV 153 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRV 153 (405)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 28999788877659999999999999779988