HHsearch alignment for GI: 254780487 and conserved domain: TIGR00313
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=99.97 E-value=7.5e-31 Score=212.73 Aligned_cols=185 Identities=20% Similarity=0.196 Sum_probs=146.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCC--CEECCC-----------CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH-
Q ss_conf 99983589874799999999998404861--201388-----------7380689999985578731144300145103-
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWK--PIQSGM-----------YEETDSKTIHRIGRIPKSHIIPEKWKLRTPA- 70 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~K--Pv~~G~-----------~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~- 70 (217)
T Consensus 1 iMV~GTsS~AGKs~l~AaLCRiL~rrGy~VAPFKsQNMSLNSfvt~~~~EiA~AQ~~QA~AAGieP~~~mNPvLLKPkgd 80 (502)
T TIGR00313 1 IMVVGTSSSAGKSLLTAALCRILARRGYRVAPFKSQNMSLNSFVTAEGGEIAIAQALQALAAGIEPSVHMNPVLLKPKGD 80 (502)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 95420115402899999999998527881278501101013331137875513768999863878862348710167888
Q ss_pred -----------------HHHHHH--HHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHCCCEEEE
Q ss_conf -----------------478899--9850235078864223288799922765556676--7530899999747944897
Q gi|254780487|r 71 -----------------SPHLAA--EIDGVIIDPATINPPDINDSIIIEGIGGLLVPLT--TEYLFIDLIERWQFPIILC 129 (217)
Q Consensus 71 -----------------~~~~~~--~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~--~~~~~~dla~~l~~~vILV 129 (217)
T Consensus 81 f~SQviv~G~a~g~~~~~~Y~~~~~d~~~~~i~eSle~L~~~Yd~vv~EGAGS~AEINL~~rDLaN~~iA~~~~A~~iLv 160 (502)
T TIGR00313 81 FTSQVIVHGRAVGDMNAQEYYKNKVDFLLKAIKESLEILAEEYDLVVIEGAGSPAEINLKERDLANMRIAELADADVILV 160 (502)
T ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEE
T ss_conf 46678984112466761567779999999999999987520288899826887100053315722478986439767999
Q ss_pred ECCCCCHHHHH-HHHHHHHHHC-CCEEEEEEECCCCC-----CCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 05776504579-9999999847-99079999769778-----0059999986199899994788888
Q gi|254780487|r 130 ARTSLGTINHS-LLSLETLRNR-NINIIGIAFIGDSM-----PKVEETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 130 ~~~~~g~i~~~-~l~~~~~~~~-g~~i~GiIlN~~~~-----~~~~~~le~~~~ipvLG~iP~~~~~ 189 (217)
T Consensus 161 ADIDRGGVFAsi~GTl~LL~~~~r~liKG~vINkfRG~~~vL~~GI~~lEelTGiPVLGv~PY~~~l 227 (502)
T TIGR00313 161 ADIDRGGVFASIYGTLKLLPEEERKLIKGIVINKFRGNVDVLESGIEKLEELTGIPVLGVLPYDENL 227 (502)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCCCEECEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 7507774324337466618834575003068835468724434456899885484234465012577