HHsearch alignment for GI: 254780487 and conserved domain: TIGR01007
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=98.93 E-value=1.1e-08 Score=73.88 Aligned_cols=156 Identities=13% Similarity=0.128 Sum_probs=106.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC----------CEECCCCCCCH-----HHHHHHHHCCCCC----CC-CCC
Q ss_conf 3299983589874799999999998404861----------20138873806-----8999998557873----11-443
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK----------PIQSGMYEETD-----SKTIHRIGRIPKS----HI-IPE 62 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K----------Pv~~G~~~~~D-----~~~~~~~~~~~~~----~~-~~~ 62 (217)
T Consensus 20 K~l~itS~~~~eGKsT~S~NiA~~fAqaGyKTLlIDgD~R~sv~~~~Fk~~n~~~GLtn~L~g~~dl~~~i~~T~isenL 99 (207)
T TIGR01007 20 KVLLITSVKAGEGKSTTSANIAVSFAQAGYKTLLIDGDMRNSVMSGTFKSQNKIKGLTNFLSGNTDLSDAICETNISENL 99 (207)
T ss_pred EEEEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHCCCCCCCC
T ss_conf 58998411058886241078899998568558887546586603678658887656333221454533342026546787
Q ss_pred CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 00145103478899985023507886422328879992276555667675308999997479448970577650457999
Q gi|254780487|r 63 KWKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLL 142 (217)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l 142 (217)
T Consensus 100 ~vi~sG~vPPNPt~LL~s~~F~~l~e~~~~~fD~iiiDTP------Pig~V~DAai~a~~~d~~~LV~~A~~~~k~~v~K 173 (207)
T TIGR01007 100 DVITSGPVPPNPTELLQSSNFKTLIETLRKYFDYIIIDTP------PIGTVIDAAIIARAVDASILVTDAGKIKKREVKK 173 (207)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC------CCCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHH
T ss_conf 2751788787754788889999999998716888999518------8666788999998729779887225326467899
Q ss_pred HHHHHHHCCCEEEEEEECCCCC
Q ss_conf 9999984799079999769778
Q gi|254780487|r 143 SLETLRNRNINIIGIAFIGDSM 164 (217)
Q Consensus 143 ~~~~~~~~g~~i~GiIlN~~~~ 164 (217)
T Consensus 174 AK~~LEq~G~~~LGvvLNK~d~ 195 (207)
T TIGR01007 174 AKEQLEQAGSKFLGVVLNKVDI 195 (207)
T ss_pred HHHHHHHHCCCEEEEEECCCCC
T ss_conf 9999986178411588888257